Metadata-Version: 2.1
Name: altocumulus
Version: 1.1.0
Summary: Command line utilities for running workflows
Home-page: https://github.com/klarman-cell-observatory/altocumulus
Author: Cumulus Team
Author-email: cumulus@broadinstitute.org
License: BSD license
Keywords: Terra
Platform: UNKNOWN
Classifier: License :: OSI Approved :: BSD License
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >= 3
Description-Content-Type: text/markdown
Requires-Dist: firecloud
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: python-dateutil
Requires-Dist: matplotlib
Requires-Dist: six

# altocumulus

Command line utilities for running workflows on [Terra](https://app.terra.bio/) including:

- Add/update methods in Terra.
- Generate a Terra WDL input.json stub.
- Run a Terra method. Replace local file paths with workspace Google Cloud bucket URLs. Automatically 
    upload referenced files to workspace Google bucket.
- Bulk add/delete methods in Terra. 
- Parse monitoring log files to determine optimal instance type and disk space.


## Installation

    git clone https://github.com/klarman-cell-observatory/altocumulus.git
    cd altocumulus
    pip install -e .

## Usage
- Type `alto` for a list of all commands.


