## ----------------------------------------------------------------------------- library(ipADMIXTURE) # # running area: ipADMIXTURE::human27pop_Qmat[[i]] is a Q matrix with K=i+1 h27pop_obj<-ipADMIXTURE(Qmat=ipADMIXTURE::human27pop_Qmat[[11]], admixRatioThs =0.15) ## ----------------------------------------------------------------------------- ipADMIXTURE::printClustersFromLabels(h27pop_obj,human27pop_labels) ## ----------------------------------------------------------------------------- ipADMIXTURE::plotAdmixClusters(h27pop_obj) ## ----------------------------------------------------------------------------- ipADMIXTURE::plotClusterLeaves(h27pop_obj) ## ----------------------------------------------------------------------------- out<-ipADMIXTURE::getPhyloTree(human27pop_Qmat,h27pop_obj$indexClsVec) plot(out$tree, type = "unrooted")