Detect Elevations and Gaps in Mapped Sequencing Read Coverage R package ProActive version 0.1.0 Automate the detection of gaps and elevations in mapped sequencing read coverage using a 2D pattern-matching algorithm. 'ProActive' detects, characterizes and visualizes read coverage patterns in both genomes and metagenomes. Optionally, users may provide gene annotations associated with their genome or metagenome in the form of a .gff file. In this case, 'ProActive' will generate an additional output table containing the gene annotations found within the detected regions of gapped and elevated read coverage. Additionally, users can search for gene annotations of interest in the output read coverage plots. Software Depends: R (>= 4.2.0) Imports: utils, stats, dplyr, ggplot2, stringr Suggests: knitr, rmarkdown, testthat (>= 3.0.0), kableExtra Jessie Maier <jlmaier@ncsu.edu> Comprehensive R Archive Network (CRAN) Jessie Maier [aut, cre, cph] (ORCID: <https://orcid.org/0009-0001-8575-5386>), Manuel Kleiner [aut, ths] (ORCID: <https://orcid.org/0000-0001-6904-0287>) GPL-2 2025-01-21 application/tgz https://CRAN.R-project.org/package=ProActive doi:10.32614/CRAN.package.ProActive