Last updated on 2026-03-31 22:52:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.1 | 21.36 | 220.42 | 241.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 15.80 | 153.35 | 169.15 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 39.00 | 319.04 | 358.04 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 35.00 | 303.26 | 338.26 | OK | |
| r-devel-macos-arm64 | 0.1.1 | 6.00 | 72.00 | 78.00 | ERROR | |
| r-devel-windows-x86_64 | 0.1.1 | 23.00 | 192.00 | 215.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.1 | 18.59 | 194.91 | 213.50 | ERROR | |
| r-release-linux-x86_64 | 0.1.1 | 19.33 | 200.45 | 219.78 | OK | |
| r-release-macos-arm64 | 0.1.1 | 6.00 | 109.00 | 115.00 | OK | |
| r-release-macos-x86_64 | 0.1.1 | 16.00 | 274.00 | 290.00 | OK | |
| r-release-windows-x86_64 | 0.1.1 | 23.00 | 217.00 | 240.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.1 | 6.00 | 89.00 | 95.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.1 | 17.00 | 251.00 | 268.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.1 | 33.00 | 266.00 | 299.00 | OK |
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘annotaR-workflow.Rmd’ using rmarkdown
Quitting from annotaR-workflow.Rmd:45-56 [annotation]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.processResults()`:
! Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_115: DBI connect('database=ensembl_mart_115;host=127.0.0.1;port=5316','ensro',...) failed: Can't connect to MySQL server on '127.0.0.1' (111) at /nfs/public/ro/ensweb/live/mart/www_115/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98.
---
Backtrace:
▆
1. ├─... %>% add_drug_links()
2. ├─annotaR::add_drug_links(.)
3. │ └─"gene" %in% names(annotaR_object)
4. └─annotaR::add_disease_links(.)
5. └─biomaRt::getBM(...)
6. └─biomaRt:::.processResults(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'annotaR-workflow.Rmd' failed with diagnostics:
Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_115: DBI connect('database=ensembl_mart_115;host=127.0.0.1;port=5316','ensro',...) failed: Can't connect to MySQL server on '127.0.0.1' (111) at /nfs/public/ro/ensweb/live/mart/www_115/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98.
--- failed re-building ‘annotaR-workflow.Rmd’
SUMMARY: processing the following file failed:
‘annotaR-workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-macos-arm64
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'annotaR-workflow.Rmd' using rmarkdown
Quitting from annotaR-workflow.Rmd:45-56 [annotation]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_500>
Error in `httr2::req_perform()`:
! HTTP 500 Internal Server Error.
---
Backtrace:
▆
1. ├─... %>% add_drug_links()
2. └─annotaR::add_drug_links(.)
3. ├─biomaRt::getBM(...)
4. │ └─biomaRt:::martCheck(mart)
5. └─biomaRt::useEnsembl("genes", "hsapiens_gene_ensembl")
6. └─biomaRt:::.listEnsembl(version = version, GRCh = GRCh, mirror = mirror)
7. └─biomaRt:::getCurrentEnsemblRelease()
8. ├─base::unlist(httr2::resp_body_json(httr2::req_perform(req)))
9. ├─httr2::resp_body_json(httr2::req_perform(req))
10. │ └─httr2:::check_response(resp)
11. │ └─httr2:::is_response(resp)
12. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'annotaR-workflow.Rmd' failed with diagnostics:
HTTP 500 Internal Server Error.
--- failed re-building 'annotaR-workflow.Rmd'
SUMMARY: processing the following file failed:
'annotaR-workflow.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘annotaR-workflow.Rmd’ using rmarkdown
Quitting from annotaR-workflow.Rmd:45-56 [annotation]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.processResults()`:
! Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_115: DBI connect('database=ensembl_mart_115;host=127.0.0.1;port=5316','ensro',...) failed: Can't connect to MySQL server on '127.0.0.1' (111) at /nfs/public/ro/ensweb/live/mart/www_115/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98.
---
Backtrace:
▆
1. ├─... %>% add_drug_links()
2. ├─annotaR::add_drug_links(.)
3. │ └─"gene" %in% names(annotaR_object)
4. └─annotaR::add_disease_links(.)
5. └─biomaRt::getBM(...)
6. └─biomaRt:::.processResults(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'annotaR-workflow.Rmd' failed with diagnostics:
Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_115: DBI connect('database=ensembl_mart_115;host=127.0.0.1;port=5316','ensro',...) failed: Can't connect to MySQL server on '127.0.0.1' (111) at /nfs/public/ro/ensweb/live/mart/www_115/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98.
--- failed re-building ‘annotaR-workflow.Rmd’
SUMMARY: processing the following file failed:
‘annotaR-workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64