Last updated on 2025-09-23 22:50:15 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 6.78 | 63.68 | 70.46 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 5.11 | 46.91 | 52.02 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 122.22 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 117.95 | OK | |||
| r-devel-windows-x86_64 | 0.0.1 | 7.00 | 77.00 | 84.00 | OK | |
| r-patched-linux-x86_64 | 0.0.1 | 7.04 | 60.96 | 68.00 | OK | |
| r-release-linux-x86_64 | 0.0.1 | 6.65 | 60.39 | 67.04 | OK | |
| r-release-macos-arm64 | 0.0.1 | 46.00 | OK | |||
| r-release-macos-x86_64 | 0.0.1 | 74.00 | OK | |||
| r-release-windows-x86_64 | 0.0.1 | 8.00 | 75.00 | 83.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.1 | 44.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.0.1 | 77.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.0.1 | 10.00 | 97.00 | 107.00 | OK |
Version: 0.0.1
Check: tests
Result: ERROR
Running ‘testOracle.R’ [5s/15s]
Running ‘testPostgres.R’ [4s/73s]
Running ‘testRedshift.R’
Running ‘testSqlServer.R’ [5s/15s]
Running the tests in ‘tests/testPostgres.R’ failed.
Complete output:
> library(testthat)
> options(dbms = "postgresql")
> test_check("CohortPathways")
Loading required package: CohortPathways
Loading required package: DatabaseConnector
Attaching package: 'dplyr'
The following object is masked from 'package:testthat':
matches
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
************* Testing on postgresql *************
Consider adding `DATABASECONNECTOR_JAR_FOLDER='/tmp/RtmpCyzXGV/working_dir/RtmpDgtzKJ/jdbcDrivers671cc3f4f5e66'` to /data/gannet/ripley/.Renviron and restarting R.
trying URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Error in `FUN()`:
! In path: "/data/gannet/ripley/R/packages/tests-clang/CohortPathways.Rcheck/tests/testthat/setup.R"
Caused by error in `download.file()`:
! cannot open URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar'
Backtrace:
▆
1. ├─testthat::test_check("CohortPathways")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_setup(".", env)
7. │ └─testthat::source_dir(path, "^setup.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─DatabaseConnector::downloadJdbcDrivers("postgresql", pathToDriver = jdbcDriverFolder) at tests/testthat/setup.R:18:3
15. │ └─utils::download.file(...)
16. └─base::.handleSimpleError(...)
17. └─testthat (local) h(simpleError(msg, call))
18. └─rlang::abort(...)
Warning message:
In download.file(url = paste0(driverSource$baseUrl, driverSource$fileName), :
URL 'https://jdbc.postgresql.org/download/postgresql-42.7.3.jar': Timeout of 60 seconds was reached
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang