R: Functions to Compute Compositional Turnover Using Zeta Diversity

# Functions to Compute Compositional Turnover Using Zeta Diversity

## Documentation for package ‘zetadiv’ version 1.3.0

- DESCRIPTION file

## Help Pages

bird.env.coarse | South-East Australia Environmental Dataset at Coarse Scale
bird.env.fine | South-East Australia Environmental Dataset at Fine Scale
bird.spec.coarse | Australia Bird Atlas Species Occurrence Dataset at Coarse Scale over South-East Australia
bird.spec.fine | Australia Bird Atlas Species Occurrence Dataset at Fine Scale over South-East Australia
glm.cons | Fitting Generalized Linear Models with constraint on the coefficients signs
glm.fit.cons | Generalized Linear Models fitting method with negative coefficients constraint
Ispline | Transform data using I-splines
Marion.env | Marion Island Environmental Dataset
Marion.species | Marion Island Species Presence-Absence Dataset
pie.neg | Pie Chart, considering negative values as zeros
Plot.ispline | Plots I-splines for Multi-Site Generalised Dissimilarity Modelling
Plot.zeta.ddecay | Zeta distance-decay plotting
Plot.zeta.ddecays | Zeta distance-decay plotting for multiple orders
Plot.zeta.decline | Zeta diversity decline plotting
Plot.zeta.scale.min.dist | Plotting of zeta diversity scaling with sample grain dependency based on the minimum distance between sites
Plot.zeta.scale.regular | Plotting of zeta diversity scaling with sample grain using hierarchical increases in grain size
Predict.msgdm | Predict zeta values for new environmental and distance data
Reg.ispline | Perform an I-spline regression
rescale.min.dist | Rescaling of data based on the minimum distance between sites
rescale.regular | Rescaling of data following a hierarchical increase in grain size
Return.ispline | Computing splines coordinates from I-spline-based multi-site generalised dissimilarity modelling
Zeta.ddecay | Zeta distance decay for a specific number of assemblages or sites
Zeta.ddecays | Zeta distance decay for a range of numbers of assemblages or sites
Zeta.decline.ex | Expectation of zeta diversity decline
Zeta.decline.mc | Zeta diversity decline using Monte Carlo sampling
Zeta.msgdm | Multi-site generalised dissimilarity modelling for a set of environmental variables and distances
Zeta.order.ex | Expectation of zeta diversity for a specific number of assemblages or sites
Zeta.order.mc | Zeta diversity for a specific number of assemblages or sites using Monte Carlo sampling
Zeta.order.mc.mult | Number of species in common between a specific number of assemblages or sites using Monte Carlo sampling, for multiple combinations and several groups of taxa
Zeta.sam.sensitivity | Sensitivity analysis for the sample size of zeta
Zeta.scale.min.dist | Zeta diversity scaling with sample grain dependency based on the minimum distance between sites
Zeta.scale.regular | Zeta diversity scaling with sample grain using hierarchical increases in grain size
Zeta.varpart | Variation partitioning for zeta diversity