LRbarplot               Plots a barplot from logistic regression
                        parameter estimates
backLog                 Backtransforms coefficient estimates from
                        logistic regression
error.bars              Plots error bars on a barplot
lrTest                  Calculates likelihood ratio test
mark.dist               Summarising distributions of
                        (exam/coursework/etc.) marks for (UK)
                        university teaching
modSel.fitMk            Model selection table for categorical trait
                        evolution models fit in the fitMk function in
                        the package phytools, based on information
                        theoretical measures.
modSel.geiger           Model selection table for phenotypic evolution
                        models fit in the package geiger, based on
                        information theoretical measures.
modSel.phylolm          Model selection table for phylogenetic
                        (logistic) regressions fit in the phylolm and
                        phyloglm functions in the package phylolm,
                        based on information theoretical measures.
modSel.rayDISC          Model selection table for evolutionary pathway
                        models fit in the package corHMM, based on
                        information theoretical measures.
modSelTab               Model selection table based on information
                        theoretical measures.
nodeDist                Plotting and/or retrieving distribution of
                        divergence times of a pair of species from a
                        set of phylogenetic trees.
pir                     Calculates phylogenetic imbalance ratio (PIR)
plotTrait               Provides a visualisation of up to
                        three-dimensional trait space (not accounting
                        for phylogeny) for data exploration
prune2data              Prunes a phylogenetic tree to match a vector
                        (e.g. of species names in a dataset)
richYuleInputs          Generates the inputs necessary to run
                        richness.yule.test() in ape
sample.data             Sample data for windex
sample.tree             Phylogenetic tree to accompany sample.data
se                      Calculates standard error
test.windex             Tests for particularly strong convergent
                        evolution given topological constraints
treecheck               Checks a set of phylogenetic trees to confirm
                        they are ultrametric and binary.
treedatacheck           Checks a set of phylogenetic trees to confirm
                        they are ultrametric and binary and that tip
                        labels match a list of names.
windex                  Calculates Wheatsheaf index with 95% confidence
                        intervals
windex.sim.test         Tests for presence of convergent evolution
                        (over and above that expected from Brownian
                        motion)
