R: Fitting Routines for the Vitality Family of Mortality Models

# Fitting Routines for the Vitality Family of Mortality Models

## Documentation for package ‘vitality’ version 1.3

- DESCRIPTION file

## Help Pages

vitality-package | Fitting routines for the Vitality family of mortality models.
daphnia | Sample Daphnia Data
dataPrep | Function for data preparation
ft.4p | Density function for 3-parameter (r, s, u)
ft.6p | Density function for 2-parameters (r, s)
indexFinder | Finds the first value of a vector that is less than a value.
logLikelihood.4p | Log likelihood of 2-process 4-parameter model
logLikelihood.6p | Log likelihood of 2-process 6-parameter vitality model
logLikelihood.k | Log likelihood of 3-parameter (r,s,k) model
logLikelihood.ku | Log likelihood of 4-parameter (r,s,k,u) model
mu.vd.4p | Total mortality rate for the 2-process 4-parameter vitality model
mu.vd.6p | Total mortality rate for the 2-process 6-parameter vitality model
mu.vd1.4p | Intrinsic mortality rate for the 2-process 4-parameter vitality model
mu.vd1.6p | Intrinsic mortality rate for the 2-process 6-parameter vitality model
mu.vd2.4p | Extrinsic mortality rate for the 2-process 4-parameter vitality model
mu.vd2.6p | Extrinsic mortality rate for the 2-process 6-parameter vitality model
mu.vd3.6p | Adult extrinsic mortality rate for the 2-process 6-parameter vitality model
mu.vd4.6p | Childhood extrinsic mortality rate for the 2-process 6-parameter vitality model
plotting.4p | Plotting function for 2-process 4-parameter vitality model
plotting.6p | Plotting function for 2-process 6-parameter vitality model
plotting.k | Plotting function for 3-parameter vitality model
plotting.ku | Plotting function for 4-parameter vitality model
rainbow_trout_for_k | Sample Rainbow Trout Data
stdErr.4p | Standard errors for 4-parameters: r, s, lambda, beta
stdErr.6p | Standard errors for 6-parameters: r, s, lambda, beta, gamma, alpha
stdErr.k | Standard errors for 3-parameters: r, s, k
stdErr.ku | Standard errors for 4-parameters: r, s, k, u
SurvFn.4p | The cumulative survival distribution function for 2-process 4-parameter vitality model
SurvFn.6p | The cumulative survival distribution function for 2-process 6-parameter vitality model
SurvFn.ex.4p | The extrinsic cumulative survival distribution function for 2-process 4-parameter vitality model
SurvFn.ex.6p | The extrinsic cumulative survival distribution function for 2-process 6-parameter vitality model
SurvFn.h.4p | Intrinsic cumulative survival distribution for 4 parameter model
SurvFn.h.6p | Intrinsic cumulative survival distribution for 6 parameter model
SurvFn.in.4p | The intrinsic cumulative survival distribution function for 2-process 4-parameter vitality model
SurvFn.in.6p | The intrinsic cumulative survival distribution function for 2-process 6-parameter vitality model
SurvFn.k | The cumulative survival distribution function for 3-parameter vitality model
SurvFn.ku | The cumulative survival distribution function for 4-parameter vitality model
survProbInc.4p | Incremental survival probability for 2-process 4-parameter model
survProbInc.6p | Incremental survival probability for 2-process 6-parameter model
survProbInc.k | Incremental survival probability for 3-parameter model
survProbInc.ku | Incremental survival probability for 4-parameter model
swedish_females | Swedish Female Mortality Data
vft.4p | Vectorized density function
vft.6p | Vectorized density function
vitality | Fitting routines for the Vitality family of mortality models.
vitality.4p | Fitting routine for the 2-process, 4-parameter vitality model (no childhood hook).
vitality.6p | Fitting routine for the 2-process, 6-parameter vitality model (with childhood hook).
vitality.k | Fitting routine for the 3-parameter vitality model.
vitality.ku | Fitting routine for the 4-parameter vitality model.