R: Vertical and Horizontal Inheritance Consistence Analysis

# Vertical and Horizontal Inheritance Consistence Analysis

## Documentation for package ‘vhica’ version 0.2.9

- DESCRIPTION file
- Package README

## Help Pages

vhica-package | Vertical and Horizontal Inheritance Consistence Analysis
CUB | Computes the Codon Usage Bias of DNA sequences
div | Computation of the synonymous divergence between sequences
image.vhica | Consistency matrix for a transposable element in the VHICA analysis.
plot.vhica | Plots a VHICA regression between two species.
read.vhica | Reads divergence and codon usage data files for the VHICA method.
summary.vhicaimage | Provides a data.frame that nicely displays the information returned by 'image.vhica'.
vhica | Vertical and Horizontal Inheritance Consistence Analysis