bed12_to_exons          Convert BED12 to individual exons in BED6.
bed_absdist             Compute absolute distances between intervals.
bed_closest             Identify closest intervals.
bed_cluster             Cluster neighboring intervals.
bed_complement          Identify intervals in a genome not covered by a
                        query.
bed_coverage            Compute coverage of intervals.
bed_fisher              Fisher's test to measure overlap between two
                        sets of intervals.
bed_flank               Create flanking intervals from input intervals.
bed_genomecov           Calculate coverage across a genome
bed_glyph               Create example glyphs for valr functions.
bed_intersect           Identify intersecting intervals.
bed_jaccard             Calculate the Jaccard statistic for two sets of
                        intervals.
bed_makewindows         Divide intervals into new sub-intervals
                        ("windows").
bed_map                 Calculate summaries from overlapping intervals.
bed_merge               Merge overlapping intervals.
bed_partition           Partition intervals into elemental intervals
bed_projection          Projection test for query interval overlap.
bed_random              Generate randomly placed intervals on a genome.
bed_reldist             Compute relative distances between intervals.
bed_shift               Adjust intervals by a fixed size.
bed_shuffle             Shuffle input intervals.
bed_slop                Increase the size of input intervals.
bed_sort                Sort a set of intervals.
bed_subtract            Subtract two sets of intervals.
bed_window              Identify intervals within a specified distance.
bound_intervals         Select intervals bounded by a genome.
create_introns          Create intron features.
create_tss              Create transcription start site features.
create_utrs3            Create 3' UTR features.
create_utrs5            Create 5' UTR features.
db                      Fetch data from remote databases.
flip_strands            Flip strands in intervals.
gr_to_bed               Convert Granges to bed tibble
interval_spacing        Calculate interval spacing.
ivl_df                  Bed-like data.frame requirements for valr
                        functions
read_bed                Read BED and related files.
read_genome             Read genome files.
read_gtf                Import and convert a GTF/GFF file into a valr
                        compatible bed tbl format
read_vcf                Read a VCF file.
valr                    valr: genome interval arithmetic in R
valr_example            Provide working directory for valr example
                        files.
