# Generated by roxygen2: do not edit by hand

export(AmpliconHeatmap)
export(AmpliconPlot)
export(BarcodeFamilyHistogram)
export(QCplot)
export(UmiCountsPlot)
export(addMetaData)
export(addUmiSample)
export(beta_binom)
export(callVariants)
export(createUMIexperiment_Debarcer)
export(createUMIsample_Debarcer)
export(createUmiExperiment)
export(createUmiSample)
export(download_template)
export(filterUmiObject)
export(filterVariants)
export(findConsensusReads)
export(generateVCF)
export(getFilteredData)
export(getMetaData)
export(importBedFile)
export(importDesign)
export(mergeAssays)
export(parseBamFiles)
export(runUmiVisualizer)
export(saveConsData)
export(timeSeriesGrid)
exportClasses(UMIexperiment)
exportClasses(UMIsample)
import(DT)
import(dplyr)
import(ggplot2)
import(magrittr)
import(readr)
import(shinyFiles)
import(shinyWidgets)
import(shinydashboard)
import(tibble)
importFrom(BiocManager,install)
importFrom(Rsamtools,scanBam)
importFrom(dplyr,between)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,progress_estimated)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(forcats,fct_relevel)
importFrom(grDevices,dev.off)
importFrom(graphics,plot)
importFrom(gridExtra,grid.arrange)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(pheatmap,pheatmap)
importFrom(plotly,ggplotly)
importFrom(readr,col_character)
importFrom(readr,col_double)
importFrom(readr,cols)
importFrom(readr,read_delim)
importFrom(readr,write_delim)
importFrom(readr,write_excel_csv)
importFrom(scales,rescale_none)
importFrom(shiny,incProgress)
importFrom(shiny,runApp)
importFrom(stats,dbeta)
importFrom(stats,median)
importFrom(stats,nlm)
importFrom(stats,p.adjust)
importFrom(stats,rbeta)
importFrom(stats,rbinom)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(stringr,str_remove)
importFrom(tibble,as_tibble)
importFrom(tibble,enframe)
importFrom(tibble,is_tibble)
importFrom(tidyr,gather)
importFrom(tidyr,separate)
importFrom(tidyr,spread)
importFrom(tidyr,unite)
importFrom(utils,data)
importFrom(utils,install.packages)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(viridis,scale_fill_viridis)
