R: Computation of Tree (Im)Balance Indices

# Computation of Tree (Im)Balance Indices

## Documentation for package ‘treebalance’ version 1.2.0

- DESCRIPTION file
- Package NEWS

## Help Pages

areaPerPairI | Calculation of the area per pair index for rooted trees
auxE_l_X | Auxiliary functions
avgLeafDepI | Calculation of the average leaf depth index for rooted trees
avgVertDep | Calculation of the average vertex depth for rooted trees
B1I | Calculation of the B1 index for rooted trees
B2I | Calculation of the B2 index for rooted trees
cherryI | Calculation of the cherry index for rooted trees
collessI | Calculation of the Colless index for rooted binary trees
collesslikeI | Calculation of the Colless-like indices for rooted trees
colPlaLab | Calculation of the Colijn-Plazzotta rank for rooted binary trees
colPlaLab_inv | Generation of the rooted binary tree corresponding to a given Colijn-Plazzotta rank
cPL_inv | Auxiliary functions
ewCollessI | Calculation of the equal weights Colless index for rooted binary trees
furnasI | Calculation of the Furnas rank for rooted binary trees
furnasI_inv | Calculation of rooted binary tree for tuple (rank, leaf number)
get.subtreesize | Auxiliary functions
getAllAncestors | Auxiliary functions
getAncVec | Auxiliary functions
getDescMatrix | Auxiliary functions
getfurranks | Auxiliary functions
getlca | Auxiliary functions
getNodesOfDepth | Auxiliary functions
getsubtree | Auxiliary functions
IbasedI | Calculation of the I-based indices for rooted trees
is_binary | Auxiliary functions
is_phylo | Auxiliary functions
maxDelW | Calculation of the (modified) maximum difference in widths for a rooted tree
maxDepth | Calculation of the maximum depth of the tree
maxDepthLeaf | Auxiliary functions
maxWidth | Calculation of the maximum width of the tree
mCherryI | Calculation of the modified cherry index for rooted binary trees
mWovermD | Calculation of the maximum width over maximum depth of the tree
rogersI | Calculation of the Rogers J index for rooted binary trees
rQuartetI | Calculation of the rooted quartet index for rooted trees
sackinI | Calculation of the Sackin index for rooted trees
sShapeI | Calculation of the s-shape statistic for rooted trees
stairs1 | Calculation of the stairs1 value for rooted binary trees
stairs2 | Calculation of the stairs2 value for rooted binary trees
symBucketLexicoSort | Auxiliary functions
symNodesI | Calculation of the symmetry nodes index for rooted binary trees
totCophI | Calculation of the total cophenetic index for rooted trees
totIntPathLen | Calculation of the total internal path length for rooted trees
totPathLen | Calculation of the total path length for rooted trees
treenumber | Auxiliary functions
treenumber_inv | Auxiliary functions
tree_decomposition | Auxiliary functions
tree_merge | Auxiliary functions
varLeafDepI | Calculation of the variance of leaf depths index for rooted trees
wedEth | Wedderburn Etherington numbers (from OEIS)
weighL1dist | Calculation of weighted l1 distance index for rooted binary trees
we_eth | Auxiliary functions