R: Computation of 3D Tree Imbalance

# Computation of 3D Tree Imbalance

## Documentation for package ‘treeDbalance’ version 1.2.0

- DESCRIPTION file

## Help Pages

addImbalPhylo3D | Plot a phylo3D object
addPhylo3D | Plot a phylo3D object
addSketchPhylo3D | Sketch a phylo3D object
all3DImbalIndices | Calculation of integral-based distance- and angle-based 3D imbalance indices
alpha_Index | Calculation of integral-based distance- and angle-based 3D imbalance indices
angle3dVec | Calculation of the centroid angles
A_Index | Calculation of integral-based distance- and angle-based 3D imbalance indices
combined3DIndex | Calculation of combined 3D imbalance indices
cross3d_prod | Calculation of the centroid distances
dist3dToLine | Calculation of the centroid distances
enum2cladewise | Change the node enumeration of trees in phylo(3D) format
enum2depthwise | Change the node enumeration of trees in phylo(3D) format
enum2_1toV | Change the node enumeration of trees in phylo(3D) format
example3Dtrees | Examples of rooted 3D trees
extendPhylo | Useful extensions to the phylo format
extractTopology | Extract the non-3D topology of trees in phylo(3D) format
getAncs | Useful extensions to the phylo format
getChildren | Useful extensions to the phylo format
getDescendants | Useful extensions to the phylo format
getDescs | Useful extensions to the phylo format
getDistFromLeaf | Useful extensions to the phylo format
getDistFromRoot | Useful extensions to the phylo format
getIncEdgeLens | Useful extensions to the phylo format
getIncEdgeWeights | Useful extensions to the phylo format
getLeaves | Useful extensions to the phylo format
getNodeDepths | Useful extensions to the phylo format
getNodesAtDepth | Useful extensions to the phylo format
getSubtrCentr | Useful extensions to the phylo format
imbalInt_e | Calculation of integral-based distance- and angle-based 3D imbalance indices
imbalProfile | Calculation of 3D imbalance profiles
imbalProfile_e | Calculation of integral-based distance- and angle-based 3D imbalance indices
imbalSubdiv_A | Calculation of the centroid angles
imbalSubdiv_alpha | Calculation of the centroid angles
imbalSubdiv_M | Calculation of the centroid distances
imbalSubdiv_mu | Calculation of the centroid distances
makePhylo3DBalanced | Turn a rooted 3D tree into one of its balanced versions
mu_Index | Calculation of integral-based distance- and angle-based 3D imbalance indices
M_Index | Calculation of integral-based distance- and angle-based 3D imbalance indices
plot.phylo3D | Print, summary and plot methods for phylo3D objects
plotImbalPhylo3D | Plot a phylo3D object
plotPhylo3D | Plot a phylo3D object
print.phylo3D | Print, summary and plot methods for phylo3D objects
qsm2phylo3D | Convert QSM format to a phylo3D object
qsmList2phylo3D | Convert QSM format to a phylo3D object
rotate3dVec | Turn a rooted 3D tree into one of its balanced versions
sketchPhylo3D | Sketch a phylo3D object
summary.phylo3D | Print, summary and plot methods for phylo3D objects