# Generated by roxygen2: do not edit by hand

S3method("[",tmod)
S3method("[",tmodGS)
S3method(length,tmodGS)
S3method(plot,tmodPCA)
S3method(print,tmodGS)
export("tmod_ids<-")
export("tmod_titles<-")
export(as_tmodGS)
export(check_tmod_gs)
export(eigengene)
export(evidencePlot)
export(filterGS)
export(getGenes)
export(getModuleMembers)
export(ggEvidencePlot)
export(ggPanelplot)
export(hgEnrichmentPlot)
export(makeTmod)
export(makeTmodFromDataFrame)
export(makeTmodGS)
export(modCorPlot)
export(modGroups)
export(modOverlaps)
export(modcors)
export(modjaccard)
export(pcaplot)
export(pvalEffectPlot)
export(showGene)
export(showModule)
export(simpleBoxpie)
export(simplePie)
export(simpleRug)
export(tmod2DataFrame)
export(tmod2tmodGS)
export(tmodAUC)
export(tmodCERNOtest)
export(tmodDecideTests)
export(tmodGeneSetTest)
export(tmodHGtest)
export(tmodImportMSigDB)
export(tmodLEA)
export(tmodLEASummary)
export(tmodLimmaDecideTests)
export(tmodLimmaTest)
export(tmodLimmaTopTable)
export(tmodPCA)
export(tmodPLAGEtest)
export(tmodPal)
export(tmodPanelPlot)
export(tmodSummary)
export(tmodTagcloud)
export(tmodUtest)
export(tmodZtest)
export(tmod_ids)
export(tmod_titles)
export(upset)
import(grDevices)
import(graphics)
import(plotwidgets)
import(stats)
importFrom(RColorBrewer,brewer.pal)
importFrom(XML,xmlParse)
importFrom(XML,xmlToList)
importFrom(beeswarm,beeswarm)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_polygon)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,lims)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_text_repel)
importFrom(gplots,heatmap.2)
importFrom(grDevices,colorRampPalette)
importFrom(methods,is)
importFrom(methods,loadMethod)
importFrom(methods,new)
importFrom(methods,representation)
importFrom(methods,setClass)
importFrom(methods,setMethod)
importFrom(methods,signature)
importFrom(pheatmap,pheatmap)
importFrom(purrr,imap)
importFrom(purrr,imap_dfr)
importFrom(purrr,map)
importFrom(purrr,map_dfr)
importFrom(rlang,.data)
importFrom(tagcloud,smoothPalette)
importFrom(tagcloud,strmultline)
importFrom(tagcloud,tagcloud)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyselect,all_of)
importFrom(tidyselect,starts_with)
importFrom(utils,combn)
