AIRRDb                  Example human immune repertoire data
GermlineIGHV            Human IGHV germlines
SampleDb                Example human immune repertoire data
SampleGenotype          Example genotype inference results
SampleGermlineIGHV      Example Human IGHV germlines
SampleNovel             Example novel allele detection results
cleanSeqs               Clean up nucleotide sequences
findNovelAlleles        Find novel alleles from repertoire sequencing
                        data
findUnmutatedCalls      Determine which calls represent an unmutated
                        allele
generateEvidence        Generate evidence
genotypeFasta           Return the nucleotide sequences of a genotype
getMutCount             Determine the mutation counts from allele calls
getMutatedPositions     Find the location of mutations in a sequence
getPopularMutationCount
                        Find mutation counts for frequency sequences
inferGenotype           Infer a subject-specific genotype using a
                        frequency method
inferGenotypeBayesian   Infer a subject-specific genotype using a
                        Bayesian approach
insertPolymorphisms     Insert polymorphisms into a nucleotide sequence
plotGenotype            Show a colorful representation of a genotype
plotNovel               Visualize evidence of novel V alleles
readIgFasta             Read immunoglobulin sequences
reassignAlleles         Correct allele calls based on a personalized
                        genotype
selectNovel             Select rows containing novel alleles
sortAlleles             Sort allele names
subsampleDb             Subsample repertoire
tigger                  tigger
updateAlleleNames       Update IGHV allele names
writeFasta              Write to a fasta file
