+.InputHeatmap          Add two tidyHeatmap objects together
N52                     Example data set N52
add_annotation          add_annotation
add_attr                Add attribute to abject
add_class               Add class to abject
annot_to_list           annot_to_list
annotation_bar          Adds a bar annotation layer to a
                        'InputHeatmap', that on evaluation creates a
                        'ComplexHeatmap'
annotation_group        Add group annotation strips to a tidyHeatmap
annotation_line         Adds a line annotation layer to a
                        'InputHeatmap', that on evaluation creates a
                        'ComplexHeatmap'
annotation_numeric      Adds a numeric annotation layer to an
                        'InputHeatmap', that on evaluation creates a
                        'ComplexHeatmap'
annotation_point        Adds a point annotation layer to a
                        'InputHeatmap', that on evaluation creates a
                        'ComplexHeatmap'
annotation_tile         Adds a tile annotation layer to a
                        'InputHeatmap', that on evaluation creates a
                        'ComplexHeatmap'
as_ComplexHeatmap       Creates a 'ComplexHeatmap' object for less
                        standard plot manipulation (e.g. changing
                        legend position)
as_matrix               Get matrix from tibble
check_if_duplicated_genes
                        Check whether there are duplicated
                        genes/transcripts
check_if_wrong_input    Check whether there are NA counts
drop_class              Remove class to abject
error_if_log_transformed
                        Check whether a numeric vector has been log
                        transformed
get_abundance_norm_if_exists
                        Get column names either from user or from
                        attributes
get_elements            Get column names either from user or from
                        attributes
get_elements_features   Get column names either from user or from
                        attributes
get_elements_features_abundance
                        Get column names either from user or from
                        attributes
get_heatmap_data        Retrieve heatmap data and dendrograms as
                        plotted
get_sample_counts       Get column names either from user or from
                        attributes
get_sample_transcript   Get column names either from user or from
                        attributes
get_sample_transcript_counts
                        Get column names either from user or from
                        attributes
get_x_y_annotation_columns
                        get_x_y_annotation_columns
heatmap                 Creates a 'InputHeatmap' object from 'tbl_df'
                        on evaluation creates a 'ComplexHeatmap'
ifelse2_pipe            This is a generalisation of ifelse that accepts
                        an object and return an objects
ifelse_pipe             This is a generalisation of ifelse that accepts
                        an object and return an objects
input_heatmap           input_heatmap
layer_arrow_down        Adds a layers of symbols above the heatmap
                        tiles to a 'InputHeatmap', that on evaluation
                        creates a 'ComplexHeatmap'
layer_arrow_up          Adds a layers of symbols above the heatmap
                        tiles to a 'InputHeatmap', that on evaluation
                        creates a 'ComplexHeatmap'
layer_asterisk          Adds a layer of symbols above the heatmap tiles
                        to a 'InputHeatmap', that on evaluation creates
                        a 'ComplexHeatmap'
layer_diamond           Adds a layers of symbols above the heatmap
                        tiles to a 'InputHeatmap', that on evaluation
                        creates a 'ComplexHeatmap'
layer_point             Adds a layers of symbols above the heatmap
                        tiles to a 'InputHeatmap', that on evaluation
                        creates a 'ComplexHeatmap'
layer_square            Adds a layers of symbols above the heatmap
                        tiles to a 'InputHeatmap', that on evaluation
                        creates a 'ComplexHeatmap'
layer_star              Adds a layer of symbols above the heatmap tiles
                        to a 'InputHeatmap', that on evaluation creates
                        a 'ComplexHeatmap'
layer_text              Adds a layers of texts above the heatmap tiles
                        to a 'InputHeatmap', that on evaluation creates
                        a 'ComplexHeatmap'
parse_formula           .formula parser
pasilla                 Example data set Pasilla
prepend                 From rlang deprecated
quo_names               Convert array of quosure (e.g. c(col_a, col_b))
                        into character vector
save_pdf                Save plot on PDF file
save_pdf,Heatmap-method
                        save_pdf
save_pdf,InputHeatmap-method
                        save_pdf
scale_robust            Scale counts in a robust way against sd == 0
select_closest_pairs    Sub function of
                        remove_redundancy_elements_though_reduced_dimensions
split_rows              Split the heatmap row-wise depending on the
                        biggest branches in the cladogram.
wrap_heatmap            Wrap tidyHeatmap (ComplexHeatmap) in a
                        patchwork-compliant patch
