R: Analysis and Visualization of Archaeological Count Data

# Analysis and Visualization of Archaeological Count Data

## Documentation for package ‘tabula’ version 3.3.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

A B C D E F G H I J L M O P R S T W

## -- A --

as.data.frame-method | Coerce to a Data Frame
aves | Birds Species and Abundances

## -- B --

Bertin | Bertin Diagram
bootstrap | Bootstrap Estimation
bootstrap-method | Bootstrap Estimation

## -- C --

cantabria | Early Magdalenian Engraved Bones
composition | Richness
composition-method | Richness

## -- D --

data.frame | Coerce to a Data Frame
diversity | Alpha Diversity
diversity-method | Alpha Diversity
doubleton | Number of Observed Species
doubleton-method | Number of Observed Species

## -- E --

eppm | Seriograph
eppm-method | Seriograph
evenness | Evenness
evenness-method | Evenness

## -- F --

Ford | Ford Diagram

## -- G --

get | Get or Set Parts of an Object
get_method | Get or Set Parts of an Object
get_method-method | Get or Set Parts of an Object

## -- H --

heterogeneity | Heterogeneity
heterogeneity-method | Heterogeneity

## -- I --

index_ace | Abundance-based Coverage Estimator
index_ace-method | Abundance-based Coverage Estimator
index_baxter | Baxter's Rarefaction
index_baxter-method | Baxter's Rarefaction
index_berger | Berger-Parker Dominance Index
index_berger-method | Berger-Parker Dominance Index
index_binomial | Binomial Co-Occurrence Assessment
index_binomial-method | Binomial Co-Occurrence Assessment
index_boone | Boone Heterogeneity Measure
index_boone-method | Boone Heterogeneity Measure
index_brainerd | Brainerd-Robinson Quantitative Index
index_brainerd-method | Brainerd-Robinson Quantitative Index
index_bray | Bray-Curtis Similarity
index_bray-method | Bray-Curtis Similarity
index_brillouin | Brillouin Diversity Index.
index_brillouin-method | Brillouin Diversity Index.
index_chao1 | Chao1 Estimator
index_chao1-method | Chao1 Estimator
index_chao2 | Chao2 Estimator
index_chao2-method | Chao2 Estimator
index_cody | Cody Measure
index_cody-method | Cody Measure
index_hurlbert | Hurlbert's Rarefaction
index_hurlbert-method | Hurlbert's Rarefaction
index_ice | Incidence-based Coverage Estimator
index_ice-method | Incidence-based Coverage Estimator
index_jaccard | Jaccard Index
index_jaccard-method | Jaccard Index
index_margalef | Margalef Richness Index
index_margalef-method | Margalef Richness Index
index_mcintosh | McIntosh Dominance Index.
index_mcintosh-method | McIntosh Dominance Index.
index_menhinick | Menhinick Richness Index
index_menhinick-method | Menhinick Richness Index
index_morisita | Morisita-Horn Quantitative Index
index_morisita-method | Morisita-Horn Quantitative Index
index_routledge | Routledge Measures
index_routledge1 | Routledge Measures
index_routledge1-method | Routledge Measures
index_routledge2 | Routledge Measures
index_routledge2-method | Routledge Measures
index_routledge3 | Routledge Measures
index_routledge3-method | Routledge Measures
index_shannon | Shannon-Wiener Diversity Index
index_shannon-method | Shannon-Wiener Diversity Index
index_simpson | Simpson Dominance Index
index_simpson-method | Simpson Dominance Index
index_sorensen | Dice-Sorensen Qualitative Index
index_sorensen-method | Dice-Sorensen Qualitative Index
index_squares | Squares Estimator
index_squares-method | Squares Estimator
index_whittaker | Whittaker Measure
index_whittaker-method | Whittaker Measure
index_wilson | Wilson Measure
index_wilson-method | Wilson Measure

## -- J --

jackknife | Jackknife Estimation
jackknife-method | Jackknife Estimation

## -- L --

labels-method | Get or Set Parts of an Object

## -- M --

matrigraph | Matrigraph
matrigraph-method | Matrigraph
mutators | Get or Set Parts of an Object

## -- O --

observed | Number of Observed Species
observed-method | Number of Observed Species
occurrence | Co-Occurrence
occurrence-method | Co-Occurrence

## -- P --

plot-method | Diversity Plot
plot-method | Rarefaction Plot
plot.DiversityIndex | Diversity Plot
plot.RarefactionIndex | Rarefaction Plot
plot_bertin | Bertin Diagram
plot_bertin-method | Bertin Diagram
plot_diceleraas | Dice-Leraas Diagram
plot_diceleraas-method | Dice-Leraas Diagram
plot_ford | Ford Diagram
plot_ford-method | Ford Diagram
plot_heatmap | Heatmap
plot_heatmap-method | Heatmap
plot_rank | Rank Plot
plot_rank-method | Rank Plot
plot_spot | Spot Plot
plot_spot-method | Spot Plot
profiles | Diversity Profiles
profiles-method | Diversity Profiles
pueblo | Pueblo IV Period Ceramics
pvi | Matrigraph
pvi-method | Matrigraph

## -- R --

rarefaction | Rarefaction
rarefaction-method | Rarefaction
richness | Richness
richness-method | Richness

## -- S --

seriograph | Seriograph
seriograph-method | Seriograph
set | Get or Set Parts of an Object
she | SHE Analysis
she-method | SHE Analysis
similarity | Similarity
similarity-method | Similarity
simulate | Measure Diversity by Comparing to Simulated Assemblages
simulate-method | Measure Diversity by Comparing to Simulated Assemblages
singleton | Number of Observed Species
singleton-method | Number of Observed Species

## -- T --

test | Diversity Test
test_shannon | Diversity Test
test_shannon-method | Diversity Test
test_simpson | Diversity Test
test_simpson-method | Diversity Test
turnover | Turnover
turnover-method | Turnover

## -- W --

woodland | Trees Incidences