R: Systematic Quantification of AgNPs to Unleash their Potential for Applicability

# Systematic Quantification of AgNPs to Unleash their Potential for Applicability

## Documentation for package ‘sysAgNPs’ version 1.0.0

- DESCRIPTION file
- Package README

## Help Pages

binary_dataset | A binary dataframe of datasets used to establish evaluation criteria.
dataset | Nanosilver data set.
sysAgNPs_score | sysAgNPs package application results in four evaluation scores.
sys_CalculateAxisPath | Calculate Axis Path This function is derived from the 'ggradar' package. <https://github.com/ricardo-bion/ggradar/>. Calculates x-y coordinates for a set of radial axes (one per variable being plotted in radar plot)
sys_CalculateGroupPath | Calculate Group Path This function is derived from the 'ggradar' package. <https://github.com/ricardo-bion/ggradar/>. Converts variable values into a set of radial x-y coordinates
sys_CE | Calculate the Combination Entropy
sys_DE | Calculate the Distribution Entropy
sys_discretize | Convert categorical variables into discrete variables
sys_eval_cri | Build Transition Scores criteria
sys_funcCircleCoords | Generate circle coordinates This function is derived from the 'ggradar' package. <https://github.com/ricardo-bion/ggradar/>. Generate coordinates to draw a circle.
sys_generate_color_values | Generate Dynamic Color Values This function is derived from the 'ggradar' package. <https://github.com/ricardo-bion/ggradar/>. This function dynamically generates a vector of color values based on the number of groups. It uses RColorBrewer for smaller sets of groups and generates a gradient for larger sets.
sys_ggradar | This function is derived from the 'ggradar' package. <https://github.com/ricardo-bion/ggradar/>.
sys_iter | Obtain the transition probability of each iteration
sys_line_radar | Line and Radar Plot of sysAgNPs score
sys_PE | Calculate the Proclivity Entropy
sys_steady | Iterate to obtain the steady state probability
sys_tran | Calculate transition probability matrix
sys_TS | Calculate the Transition Scores
tran_matrix | A transfer probability matrix.