Package: stmgp
Type: Package
Title: Rapid and Accurate Genetic Prediction Modeling for Genome-Wide
        Association or Whole-Genome Sequencing Study Data
Version: 1.0.4.2
Date: 2025-10-03
Authors@R: person(given = "Masao", family = "Ueki", role = c("aut", "cre"), email = "uekimrsd@nifty.com")
Maintainer: Masao Ueki <uekimrsd@nifty.com>
Description: Rapidly build accurate genetic prediction models for genome-wide association or whole-genome sequencing study data by smooth-threshold multivariate genetic prediction (STMGP) method. Variable selection is performed using marginal association test p-values with an optimal p-value cutoff selected by Cp-type criterion. Quantitative and binary traits are modeled respectively via linear and logistic regression models. A function that works through PLINK software (Purcell et al. 2007 <DOI:10.1086/519795>, Chang et al. 2015 <DOI:10.1186/s13742-015-0047-8>) <https://www.cog-genomics.org/plink2> is provided. Covariates can be included in regression model.
SystemRequirements: PLINK must be installed
License: GPL (>= 2)
Depends: MASS
NeedsCompilation: no
Packaged: 2025-10-03 00:23:38 UTC; dl-box
Author: Masao Ueki [aut, cre]
Repository: CRAN
Date/Publication: 2025-10-03 02:20:02 UTC
Built: R 4.6.0; ; 2026-04-25 22:36:47 UTC; unix
