PhenoarchDat1           Greenhouse data for a maize experiment in the
                        PhenoArch platform.
PhenovatorDat1          Growth chamber data for an Arabidopsis
                        experiment in the Phenovator platform.
RootDat1                Greenhouse data for an experiment in the
                        RootPhAir platform.
as.data.frame.TP        Coerce TP object to data.frame
countValid              Count valid observations per time point for a
                        given trait
countValidPlot          Count valid observations per plotId for a given
                        trait
createTimePoints        Create an object of class TP
detectSerieOut          Detect outliers for series of observations
detectSingleOut         Detect outliers for single observations
detectSingleOutMaize    detectSingleOutMaize
estimateSplineParameters
                        Extract estimates from fitted splines.
fitModels               Fit spatial models per time point
fitSpline               Fit Splines
fitSplineHDM            Fit P-Spline Hierarchical Curve Data Models
getCorrected            Extract corrected phenotypic values
getEffDims              Extract effective dimensions
getGenoPred             Extract predicted genotypic values
getHerit                Extract heritabilities
getTimePoints           Extract time points
getVar                  Extract variances
noCorrectedRoot         Root data corrected for outliers for single
                        observations.
plot.HTPSpline          Plot the results of a fitted spline.
plot.TP                 Plot function for class TP
plot.fitMod             Plot function for class fitMod
plot.psHDM              Plot function for class psHDM
plot.serieOut           Plot outliers for series of observations
plot.singleOut          Plot outliers for single observations
plot.splineEst          Plot the results of estimated spline
                        parameters.
predict.psHDM           Predict the P-Splines Hierarchical Curve Data
                        Model
removeSerieOut          Replace outliers for series of observations by
                        NA
removeSingleOut         Replace outliers for single observations by NA
removeTimePoints        Remove time points from an object of class TP
spatCorrectedArch       Maize data corrected for spatial trends.
spatCorrectedVator      Arabidopsis data corrected for spatial trends.
spatPredArch            Maize data, genotypic predictions.
summary.TP              Summary function for TP objects
summary.fitMod          Summary function for fitMod objects
