Package: stIHC
Type: Package
Title: Spatial Transcriptomics Iterative Hierarchical Clustering
Version: 0.1.0
Authors@R: 
    c(person("Catherine", "Higgins", , "catherine.higgins@ucd.ie", role = c("aut", "cre")),
    person("Jingyi Jessica", "Li", , "lijy03@fredhutch.org", role = c("aut")),
    person("Michelle", "Carey", , "michelle.carey@ucd.ie", role = c("aut")))
Description: Spatial transcriptomics iterative hierarchical clustering ('stIHC'), is a method for identifying spatial gene co-expression modules, defined as groups of genes with shared spatial expression patterns. The method is applicable across spatial transcriptomics technologies with differing spatial resolution, and provides a framework for investigating the spatial organisation of gene expression in tissues. For further details, see Higgins C., Li J.J., Carey M. <doi:10.1002/qub2.70011>.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.0.0)
Imports: fdaPDE, stats, cluster, mclust
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, covr
RoxygenNote: 7.3.3
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-01-08 13:37:37 UTC; crtuser
Author: Catherine Higgins [aut, cre],
  Jingyi Jessica Li [aut],
  Michelle Carey [aut]
Maintainer: Catherine Higgins <catherine.higgins@ucd.ie>
Repository: CRAN
Date/Publication: 2026-01-12 18:50:10 UTC
Built: R 4.6.0; ; 2026-04-26 21:55:12 UTC; unix
