Package: spatPomp
Type: Package
Title: Inference for Spatiotemporal Partially Observed Markov Processes
Version: 1.1.0
Date: 2025-09-03
Authors@R: c(
  person("Kidus", "Asfaw", email = "kidusasfaw1990@gmail.com", role = c("aut")),
  person("Edward", "Ionides", email = "ionides@umich.edu",role = c("cre","aut")),
  person("Aaron A.", "King", email = "kingaa@umich.edu", role = c("aut")),
  person("Allister", "Ho", email = "allistho@umich.edu", role = c("ctb")),
  person("Joonha", "Park", email = "j.park@ku.edu", role = c("ctb")),
  person("Jesse", "Wheeler", email = "jeswheel@umich.edu", role = c("ctb")),
  person("Jifan", "Li", email = "jifanli@umich.edu", role = c("ctb")),
  person("Ning", "Ning", email = "patning@tamu.edu", role = c("ctb")),
  person("Haogao", "Gu", email = "hggu@connect.hku.hk", role = c("ctb")),
  person("Kunyang", "He", email = "hkunyang@umich.edu", role = c("ctb")),
  person("Gottfried", "Julian", email = "", role = c("ctb")))
URL: https://github.com/spatPomp-org/spatPomp
Description: Inference on panel data using spatiotemporal partially-observed Markov process (SpatPOMP) models. The 'spatPomp' package extends 'pomp' to include algorithms taking advantage of the spatial structure in order to assist with handling high dimensional processes. See Asfaw et al. (2024) <doi:10.48550/arXiv.2101.01157> for further description of the package.
SystemRequirements: For Windows users, Rtools (see
        https://cran.r-project.org/bin/windows/Rtools/).
License: GPL-3
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/spatPomp-org/spatPomp/issues/
Depends: pomp (>= 5.4), R(>= 4.1), methods
LinkingTo: pomp
Suggests: doParallel (>= 1.0.11), parallel, doRNG
Imports: foreach, dplyr, tidyr, stringr, abind, rlang, ggplot2
Collate: 'spatPomp_class.R' 'abf.R' 'abfir.R' 'arma_benchmark.R'
        'get_covariate_names.R' 'as_data_frame.R' 'bm.R' 'bm2.R'
        'bm2_kalman_logLik.R' 'bm_kalman_logLik.R' 'bpfilter.R'
        'city_data_UK.R' 'iter_filter.R' 'safecall.R' 'pstop.R'
        'undefined.R' 'spatPomp.R' 'ibpf.R' 'listie.R' 'conc.R'
        'concat.R' 'dunit_measure.R' 'enkf.R' 'eunit_measure.R' 'gbm.R'
        'girf.R' 'he10.R' 'he10coordinates.R' 'he10demography.R'
        'he10measles.R' 'he10mle.R' 'ienkf.R' 'igirf.R' 'init.R'
        'iubf.R' 'loglik.R' 'lorenz.R' 'measles.R' 'measles2.R'
        'measlesUK.R' 'munit_measure.R' 'package.R' 'param_formats.R'
        'plot.R' 'print.R' 'runit_measure.R' 'simulate.R'
        'spatPomp_Csnippet.R' 'spatPomp_workhorses.R' 'unit_names.R'
        'vec_dmeasure.R' 'vec_rmeasure.R' 'vunit_measure.R'
RoxygenNote: 7.3.2
NeedsCompilation: yes
Packaged: 2025-09-03 18:51:34 UTC; ionides
Author: Kidus Asfaw [aut],
  Edward Ionides [cre, aut],
  Aaron A. King [aut],
  Allister Ho [ctb],
  Joonha Park [ctb],
  Jesse Wheeler [ctb],
  Jifan Li [ctb],
  Ning Ning [ctb],
  Haogao Gu [ctb],
  Kunyang He [ctb],
  Gottfried Julian [ctb]
Maintainer: Edward Ionides <ionides@umich.edu>
Repository: CRAN
Date/Publication: 2025-09-03 19:10:02 UTC
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-26 21:46:21 UTC; unix
Archs: spatPomp.so.dSYM
