# Generated by roxygen2: do not edit by hand

S3method(fetch_allele1,GdsGenotypeReader)
S3method(fetch_allele1,GenotypeData)
S3method(fetch_allele1,GenotypeDataSubset)
S3method(fetch_allele1,default)
S3method(fetch_allele2,GdsGenotypeReader)
S3method(fetch_allele2,GenotypeData)
S3method(fetch_allele2,GenotypeDataSubset)
S3method(fetch_allele2,default)
S3method(fetch_gds,GdsGenotypeReader)
S3method(fetch_gds,GenotypeData)
S3method(fetch_gds,GenotypeDataSubset)
S3method(fetch_gds,default)
S3method(get_scan_annot,GenotypeData)
S3method(get_scan_annot,GenotypeDataSubset)
S3method(get_snp_annot,GenotypeData)
S3method(get_snp_annot,GenotypeDataSubset)
S3method(is_snp_first_dim,GdsGenotypeReader)
S3method(is_snp_first_dim,GenotypeData)
S3method(is_snp_first_dim,MatrixGenotypeReader)
S3method(is_snp_first_dim,NcdfGenotypeReader)
S3method(is_snp_first_dim,default)
S3method(is_snp_first_dim,gds.class)
export("%$%")
export("%<>%")
export("%>%")
export(chisq_pvalues)
export(chisq_pvalues_gdata)
export(diamond_annots)
export(gdata_add_gene_annots)
export(gdata_add_gene_annots_aim_example)
export(gdata_add_gene_annots_hladr_example)
export(gdata_scans_annots)
export(gdata_snps_annots)
export(get_biomart_metadb)
export(ggplot_associations)
export(ggplot_ld)
export(ggplot_snp_pos)
export(gtable_ld)
export(gtable_ld_associations)
export(gtable_ld_associations_combine)
export(gtable_ld_associations_gdata)
export(gtable_ld_gdata)
export(gtable_ld_grobs)
export(load_gds_as_genotype_data)
export(parallel_apply)
export(print_qc_as_tex_table)
export(save_hgdp_as_gds)
export(select_region_idxs)
export(snprelate_allele_frequencies)
export(snprelate_ld)
export(snprelate_ld_select)
export(snprelate_qc)
import(GWASTools)
import(gdsfmt)
import(ggplot2)
importFrom(SNPRelate,snpgdsIBS)
importFrom(SNPRelate,snpgdsLDMat)
importFrom(SNPRelate,snpgdsLDpruning)
importFrom(SNPRelate,snpgdsOpen)
importFrom(SNPRelate,snpgdsSNPRateFreq)
importFrom(SNPRelate,snpgdsSampMissRate)
importFrom(SNPRelate,snpgdsSelectSNP)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useMart)
importFrom(cowplot,theme_cowplot)
importFrom(data.table,fread)
importFrom(ggrepel,geom_label_repel)
importFrom(grDevices,grey)
importFrom(grDevices,rgb)
importFrom(grid,grid.draw)
importFrom(grid,unit)
importFrom(gtable,gtable_add_grob)
importFrom(gtable,gtable_add_rows)
importFrom(gtable,gtable_filter)
importFrom(knitr,kable)
importFrom(magrittr,"%$%")
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(parallel,mclapply)
importFrom(reshape2,melt)
importFrom(stats,chisq.test)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,setNames)
importFrom(utils,globalVariables)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(utils,unzip)
