AccSGD                  AccSGD
AdaBound                AdaBound
Adamax                  Adamax
DNN                     Non-linear model (deep neural network) of
                        environmental responses
DiffGrad                DiffGrad
RMSprop                 RMSprop
Rsquared                R-squared
SGD                     SGD
anova.sjSDM             Anova / Variation partitioning
bioticStruct            biotic structure
butterflies             butterflies
checkModel              check model check model and rebuild if
                        necessary
check_module            check module
coef.sjSDM              Return coefficients from a fitted sjSDM model
eucalypts               eucalypts
generateSpatialEV       Generate spatial eigenvectors
getCor                  getCor
getCov                  getCov
getImportance           getImportance
getSe                   Post hoc calculation of standard errors
getWeights              Get weights
importance              Importance of environmental, spatial and
                        association components
install_diagnostic      install diagnostic
install_sjSDM           Install sjSDM and its dependencies
installation_help       Installation help
internalStructure       Plot internal metacommunity structure
is_torch_available      is_torch_available
linear                  Linear model of environmental response
logLik.sjSDM            Extract negative-log-Likelihood from a fitted
                        sjSDM model
madgrad                 madgrad
new_image               new_image function
plot.sjSDM              Coefficients plot
plot.sjSDM.DNN          Training history
plot.sjSDM_cv           Plot elastic net tuning
plot.sjSDManova         Plot anova results
plot.sjSDMimportance    Plot importance
plot.sjSDMinternalStructure
                        Plot internal structure
plotAssemblyEffects     Plot predictors of assembly processes
plotsjSDMcoef           Internal coefficients plot
predict.sjSDM           Predict from a fitted sjSDM model
print.DNN               Print a DNN object
print.bioticStruct      Print a bioticStruct object
print.linear            Print a linear object
print.sjSDM             Print a fitted sjSDM model
print.sjSDM_cv          Print a fitted sjSDM_cv model
print.sjSDManova        Print sjSDM anova object
print.sjSDMimportance   Print importance
print.sjSDMinternalStructure
                        Print internal structure object
residuals.sjSDM         Residuals for a sjSDM model
setWeights              Set weights
simulate.sjSDM          Generates simulations from sjSDM model
simulate_SDM            Simulate joint Species Distribution Models
sjSDM                   Fitting scalable joint Species Distribution
                        Models (sjSDM)
sjSDMControl            sjSDM control object
sjSDM_cv                Cross validation of elastic net tuning
summary.sjSDM           Return summary of a fitted sjSDM model
summary.sjSDM_cv        Return summary of a fitted sjSDM_cv model
summary.sjSDManova      Summary table of sjSDM anova
update.sjSDM            Update and re-fit a model call
