R: Simulate Forensic DNA Mixtures

# Simulate Forensic DNA Mixtures

## Documentation for package ‘simDNAmixtures’ version 1.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

allele_specific_stutter_model | Stutter model where the expected stutter rate depends on the allele and locus
drop_model | Defines a (semi-continuous) drop model
gamma_model | Defines a gamma model for peak height variability
gf_configuration | Stutters and size regressions for a GlobalFiler 3500 kit
global_stutter_model | Global stutter model where the expected stutter rate is constant across alleles and loci
kits | Properties such as loci, dye, sizes for most standard forensic kits
log_normal_model | Defines a log normal model for peak height variability
read_allele_freqs | Read allele frequencies in FSIgen format (.csv)
read_size_regression | Reads a size regression file
read_STRmix_kit_settings | Read STRmix Kit Settings
read_stutter_exceptions | Reads a stutter exceptions file with overrides for expected stutter ratios
read_stutter_regression | Reads a stutter regression file
read_wide_table | Read wide table (.txt) with Allele1, Allele2, ... columns as is
sample_contributor_genotypes | Sample genotypes for mixture contributors according to allele frequencies
sample_drop_model | Sample drop model(s) with parameters according to priors
sample_gamma_model | Sample gamma model(s) with parameters according to priors
sample_genotype | Sample a genotype according to allele frequencies
sample_log_normal_model | Sample log normal model(s) with parameters according to priors
sample_log_normal_parameters | Sample log normal model parameters according to priors
sample_log_normal_stutter_variance | Sample log normal stutter variance parameters according to priors
sample_LSAE | Sample Locus Specific Amplification Efficiency (LSAE) according to prior
sample_many_pedigree_genotypes | Sample (many) genotypes for pedigree members according to allele frequencies by allele dropping and possibly taking linkage into account by simulating recombination.
sample_mixtures | Sample mixtures with random genotypes and random parameters according to priors
sample_mixtures_fixed_parameters | Sample mixtures with known genotypes and fixed parameters
sample_mixtures_from_genotypes | Sample mixtures with known genotypes and random parameters according to priors
sample_mixture_from_genotypes | Sample mixture profile with provided genotypes
sample_offspring | Sample offspring from two parental genotypes
sample_pedigree_genotypes | Sample genotypes for pedigree according to allele frequencies by allele dropping.
SMASH_to_wide_table | Converts SMASH (SampleName, Marker, Allele, Size, Height) data to a wide table
stutter_type | Defines a stutter type to be used in the allele specific stutter model.