analyze_sims            Analyze simulation results
as_noise_params         Load noise parameters
as_pop_data             Load a cross-sectional antibody survey data set
as_sr_params            Load longitudinal seroresponse parameters
autoplot.curve_params   Graph antibody decay curves by antigen isotype
autoplot.pop_data       Plot distribution of antibodies
autoplot.seroincidence
                        Plot the log-likelihood curve for the incidence
                        rate estimate
autoplot.seroincidence.by
                        Plot 'seroincidence.by' log-likelihoods
autoplot.sim_results    Plot simulation results 'autoplot()' method for
                        'sim_results' objects
autoplot.summary.seroincidence.by
                        Plot method for 'summary.seroincidence.by'
                        objects
check_pop_data          Check the formatting of a cross-sectional
                        antibody survey dataset.
compare_seroincidence   Compare seroincidence rates between two groups
est_seroincidence       Find the maximum likelihood estimate of the
                        incidence rate parameter
est_seroincidence_by    Estimate Seroincidence
example_noise_params_pk
                        Small example of noise parameters for typhoid
example_noise_params_sees
                        Small example of noise parameters for typhoid
get_biomarker_levels    Extract biomarker levels
get_biomarker_names_var
                        Get biomarker variable name
get_values              Get antibody measurement values
get_values_var          Extract antibody measurement values
graph.curve.params      Graph estimated antibody decay curves
graph_loglik            Graph log-likelihood of data
load_noise_params       Load noise parameters
load_pop_data           Load a cross-sectional antibody survey data set
load_sr_params          Load longitudinal seroresponse parameter
                        samples
log_likelihood          Calculate log-likelihood
sees_pop_data_100       Small example cross-sectional data set
sees_pop_data_pk_100    Small example cross-sectional data set
sees_typhoid_ests_strat
                        Example '"seroincidence.by"' object
serocalculator_example
                        Get path to an example file
sim_pop_data            Simulate a cross-sectional serosurvey with
                        noise
sim_pop_data_multi      Simulate multiple data sets
strata                  Extract 'Strata' metadata from an object
summary.seroincidence   Summarizing fitted seroincidence models
summary.seroincidence.by
                        Summary Method for '"seroincidence.by"' Objects
typhoid_curves_nostrat_100
                        Small example of antibody response curve
                        parameters for typhoid
