ThinDataToDESeqDataSet
                        Converts a ThinData S3 object into a
                        DESeqDataSet S4 object.
ThinDataToSummarizedExperiment
                        Converts a ThinData S3 object into a
                        SummarizedExperiment S4 object.
corassign               Group assignment that is correlated with latent
                        factors.
effective_cor           Estimates the effective correlation.
est_sv                  Estimate the surrogate variables.
fix_cor                 Fixes an invalid target correlation.
permute_design          Permute the design matrix so that it is
                        approximately correlated with the surrogate
                        variables.
poisthin                Apply Poisson thinning to a matrix of count
                        data.
select_counts           Subsample the rows and columns of a count
                        matrix.
seqgendiff-package      seqgendiff: RNA-Seq Generation/Modification for
                        Simulation
summary.ThinData        Provide summary output of a ThinData S3 object.
thin_2group             Binomial thinning in the two-group model.
thin_all                Binomial thinning for altering read-depth.
thin_base               Base binomial thinning function.
thin_diff               Binomial thinning for differential expression
                        analysis.
thin_gene               Binomial thinning for altering total gene
                        expression levels
thin_lib                Binomial thinning for altering library size.
uncorassign             Group assignment independent of anything.
