R: Advanced Analytics and Testing Framework for Systematic Review Search Strategies

# Advanced Analytics and Testing Framework for Systematic Review Search Strategies

## Documentation for package ‘searchAnalyzeR’ version 0.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

analysis_env | Create a Temporary Analysis Environment
auto_detect_columns | Auto-detect Column Mappings
BenchmarkValidator | Benchmark Validation System
bootstrap_compare | Bootstrap Comparison of Search Strategies
cache_manage | Manage Search Results Cache
calc_ci | Calculate Confidence Intervals
calc_cosine | Calculate Cosine Similarity
calc_coverage | Calculate Coverage Metrics Across Databases
calc_efficiency | Calculate Search Efficiency Metrics
calc_jaccard | Calculate Jaccard Similarity
calc_precision_recall | Calculate Precision and Recall Metrics
calc_sample_size | Power Analysis for Search Strategy Evaluation
calc_search_stats | Calculate Search Result Statistics
calc_strategy_comparison | Calculate Strategy Comparison Metrics
calc_temporal_coverage | Calculate Temporal Coverage Metrics
calc_tes | Calculate Term Effectiveness Score
calc_text_sim | Calculate Text Similarity
check_deps | Utility Functions for searchAnalyzeR Package
chunk_process | Process Large Dataset in Chunks
clean_col_names | Clean Column Names
clean_text | Clean Text Fields
compare_strategies | Benchmark Testing Framework for Search Strategies
compare_terms | Compare Terms Across Strategies
complete_search_workflow | Complete Search and Analysis Workflow
create_analysis_template | Create Analysis Template Script
create_data_dictionary | Create Data Dictionary
create_data_package | Create Data Package for Sharing
create_package_manifest | Create Package Manifest
create_package_readme | Create Package README
create_prisma | Create PRISMA Flow Diagram with Proper Spacing and Text Enclosure
create_progress_bar | Create Progress Bar for Long Operations
create_strategy | Create Default Search Strategy Template
create_summary | Create Summary Statistics Table
cv_strategy | Cross-Validation Framework for Search Strategies
detect_doi_dupes | Detect DOI-based Duplicates
detect_dupes | Detect and Remove Duplicate Records
detect_exact_dupes | Detect Exact Duplicates
detect_fuzzy_dupes | Detect Fuzzy Duplicates
export_metrics | Export Analysis Metrics
export_metrics_csv | Export Metrics to CSV
export_metrics_json | Export Metrics to JSON
export_metrics_xlsx | Export Metrics to Excel
export_results | Export Utilities for Search Analysis Results
export_to_bibtex | Export to BibTeX Format
export_to_csv | Export to CSV Format
export_to_endnote | Export to EndNote Format
export_to_ris | Export to RIS Format
export_to_xlsx | Export to Excel Format with Multiple Sheets
export_validation | Export Validation Results
export_validation_csv | Export Validation Results to CSV
export_validation_json | Export Validation Results to JSON
export_validation_xlsx | Export Validation Results to Excel
extract_screening | Extract Screening Data Structure
find_top_terms | Find Top Performing Terms
format_numbers | Format Numbers for Display
gen_repro_seed | Generate Reproducible Random Seed
get_pkg_versions | Extract Package Version Information
is_empty | Check if Object is Empty
mem_cleanup | Clean up Search Analysis Objects to Free Memory
mem_monitor | Monitor Memory Usage During Function Execution
mem_usage | Get Current Memory Usage
merge_results | Merge Search Results from Multiple Sources
meta_analyze | Meta-Analysis of Benchmark Results
opt_df | Memory-Efficient Data Frame
plot_db_performance | Create Database Performance Comparison
plot_keyword_eff | Create Keyword Effectiveness Analysis Plot
plot_overview | Visualization Functions for Search Strategy Analysis
plot_pr_curve | Create Precision-Recall Curve
plot_sensitivity | Create Sensitivity Analysis Heatmap
plot_temporal | Create Temporal Coverage Plot
plot_term_effectiveness | Plot Term Effectiveness Results
print.term_comparison | Print Method for Term Comparison
print.term_effectiveness | Print Method for term_effectiveness Objects
PRISMAReporter | PRISMA-Compliant Report Generator
PubMedConnector | PubMed Database Connector
rename_columns | Rename Columns Based on Mapping
ReproducibilityManager | Search Reproducibility Manager
run_benchmarks | Benchmark Suite Execution
safe_divide | Safe Division Function
safe_list_to_df | Convert List to Data Frame Safely
SearchAnalyzer | Search Strategy Analytics Engine
search_multiple_databases | Search Multiple Databases
search_pubmed | Search PubMed and Retrieve Articles
simulate_search_execution | Simulate Search Strategy Execution
standardize_date | Standardize Date Formats
std_cochrane_results | Standardize Cochrane Results
std_embase_results | Standardize Embase Results
std_generic_results | Standardize Generic Results
std_pubmed_results | Standardize PubMed Results
std_scopus_results | Standardize Scopus Results
std_search_results | Standardize Search Results Format
std_wos_results | Standardize Web of Science Results
stream_file | Stream Process Large Files
term_effectiveness | Analyze Term Effectiveness in Search Results
validate_date_range | Validate Date Range
validate_strategy | Validate Search Strategy Object