R: Identifying Synergistic Gene Pairs in Single-Cell and Spatial Transcriptomics

# Identifying Synergistic Gene Pairs in Single-Cell and Spatial Transcriptomics

## Documentation for package ‘scPairs’ version 0.1.8

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

AssessGenePair | Assess the Synergy of a Specific Gene Pair
FindAllPairs | Discover All Synergistic Gene Pairs
FindGenePairs | Find Synergistic Partners for a Given Gene
PlotBridgeNetwork | Plot Bridge Gene Network
PlotPairCrossType | Plot Cross-Cell-Type Interaction Heatmap
PlotPairDimplot | Plot Gene Pair Co-Expression on UMAP / Dimensionality Reduction
PlotPairHeatmap | Plot Synergy Score Heatmap
PlotPairNetwork | Plot Gene Interaction Network
PlotPairScatter | Scatter Plot of Two Genes (Cell-Level)
PlotPairSmoothed | Enhanced Co-Expression Visualization with Neighbourhood Smoothing
PlotPairSpatial | Plot Spatial Co-Expression Map
PlotPairSummary | Comprehensive Synergy Summary Plot
PlotPairSynergy | Visualize Synergistic Relationship Between Gene Pairs
PlotPairViolin | Violin Plot of Pair Expression Across Clusters
print.scPairs_gene_result | Print method for scPairs_gene_result
print.scPairs_pair_result | Print method for scPairs_pair_result
print.scPairs_result | Print method for scPairs_result
scpairs_testdata | Synthetic Seurat Test Object for scPairs Examples and Tests