R: Metabolic State Space and Trajectory Analysis for Single-Cell Data

# Metabolic State Space and Trajectory Analysis for Single-Cell Data

## Documentation for package ‘scMetaTraj’ version 0.1.1

- DESCRIPTION file

## Help Pages

scMetaTraj_axis_score | Calculate metabolic axis scores
scMetaTraj_cluster | Cluster cells in metabolic PCA space
scMetaTraj_cluster_profile | Summarize metabolic profiles of clusters
scMetaTraj_embed | Embed cells in metabolic feature space
scMetaTraj_flow | Compute local directional consistency along mPT
scMetaTraj_mPT_distribution | Prepare mPT distribution data for metabolic subclusters
scMetaTraj_plot_gradient | Plot metabolic gradient on UMAP
scMetaTraj_plot_module_cards | Plot metabolic module cards
scMetaTraj_plot_trend_by_cluster | Plot module trends by metabolic cluster
scMetaTraj_plot_trend_multi | Plot multiple module trends with switchpoints
scMetaTraj_score | Calculate metabolic pathway scores for single cells
scMetaTraj_switchpoint | Identify metabolic trajectory switchpoint
scMetaTraj_transition_zone | Identify candidate transition zone along mPT
scMetaTraj_trend | Compute metabolic module trend along pseudotime
scMetaTraj_trend_by_cluster | Compute module trends along mPT stratified by metabolic cluster
scMetaTraj_trend_multi | Compute trends and switchpoints for multiple modules along mPT