# Generated by roxygen2: do not edit by hand

export(apply_combat)
export(clean_data)
export(colMeanVars)
export(compare_decompositions)
export(compute_LR_interact)
export(compute_associations)
export(compute_donor_props)
export(convert_gn)
export(determine_ranks_tucker)
export(form_tensor)
export(get_all_lds_factor_plots)
export(get_ctype_prop_associations)
export(get_ctype_subc_prop_associations)
export(get_ctype_vargenes)
export(get_donor_meta)
export(get_gene_modules)
export(get_intersecting_pathways)
export(get_lm_pvals)
export(get_meta_associations)
export(get_min_sig_genes)
export(get_normalized_variance)
export(get_num_batch_ranks)
export(get_one_factor)
export(get_one_factor_gene_pvals)
export(get_pseudobulk)
export(get_subclust_enr_dotplot)
export(get_subclust_enr_fig)
export(get_subclust_umap)
export(get_subclusters)
export(get_subtype_prop_associations)
export(get_sums)
export(identify_sex_metadata)
export(initialize_params)
export(instantiate_scMinimal)
export(make_new_container)
export(nmf_unfolded)
export(norm_var_helper)
export(normalize_counts)
export(normalize_pseudobulk)
export(parse_data_by_ctypes)
export(pca_unfolded)
export(plot_donor_matrix)
export(plot_donor_sig_genes)
export(plot_dscore_enr)
export(plot_gsea_hmap_w_similarity)
export(plot_gsea_sub)
export(plot_loadings_annot)
export(plot_mod_and_lig)
export(plot_multi_module_enr)
export(plot_scores_by_meta)
export(plot_select_sets)
export(plot_subclust_associations)
export(prep_LR_interact)
export(project_new_data)
export(reduce_dimensions)
export(reduce_to_vargenes)
export(render_multi_plots)
export(run_gsea_one_factor)
export(run_jackstraw)
export(run_stability_analysis)
export(run_tucker_ica)
export(scale_variance)
export(seurat_to_scMinimal)
export(stack_tensor)
export(subset_scMinimal)
export(tucker_ica_helper)
export(update_params)
export(vargenes_anova)
import(ComplexHeatmap)
import(Matrix)
import(ggplot2)
import(grid)
importFrom(Rcpp,sourceCpp)
importFrom(Rmisc,summarySE)
importFrom(circlize,colorRamp2)
importFrom(dplyr,"%>%")
importFrom(grDevices,col2rgb)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,rgb)
importFrom(grid,gpar)
importFrom(parallel,mclapply)
importFrom(stats,anova)
importFrom(stats,aov)
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,p.adjust)
importFrom(stats,quantile)
importFrom(stats,sd)
useDynLib(scITD)
