
<script>
/* ========================================================================
 * Bootstrap: transition.js v3.3.7
 * http://getbootstrap.com/javascript/#transitions
 * ========================================================================
 * Copyright 2011-2016 Twitter, Inc.
 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
 * ======================================================================== */


+function ($) {
  'use strict';

  // CSS TRANSITION SUPPORT (Shoutout: http://www.modernizr.com/)
  // ============================================================

  function transitionEnd() {
    var el = document.createElement('bootstrap')

    var transEndEventNames = {
      WebkitTransition : 'webkitTransitionEnd',
      MozTransition    : 'transitionend',
      OTransition      : 'oTransitionEnd otransitionend',
      transition       : 'transitionend'
    }

    for (var name in transEndEventNames) {
      if (el.style[name] !== undefined) {
        return { end: transEndEventNames[name] }
      }
    }

    return false // explicit for ie8 (  ._.)
  }

  // http://blog.alexmaccaw.com/css-transitions
  $.fn.emulateTransitionEnd = function (duration) {
    var called = false
    var $el = this
    $(this).one('bsTransitionEnd', function () { called = true })
    var callback = function () { if (!called) $($el).trigger($.support.transition.end) }
    setTimeout(callback, duration)
    return this
  }

  $(function () {
    $.support.transition = transitionEnd()

    if (!$.support.transition) return

    $.event.special.bsTransitionEnd = {
      bindType: $.support.transition.end,
      delegateType: $.support.transition.end,
      handle: function (e) {
        if ($(e.target).is(this)) return e.handleObj.handler.apply(this, arguments)
      }
    }
  })

}(jQuery);
</script>
<script>
/* ========================================================================
 * Bootstrap: collapse.js v3.3.7
 * http://getbootstrap.com/javascript/#collapse
 * ========================================================================
 * Copyright 2011-2016 Twitter, Inc.
 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
 * ======================================================================== */

/* jshint latedef: false */

+function ($) {
  'use strict';

  // COLLAPSE PUBLIC CLASS DEFINITION
  // ================================

  var Collapse = function (element, options) {
    this.$element      = $(element)
    this.options       = $.extend({}, Collapse.DEFAULTS, options)
    this.$trigger      = $('[data-toggle="collapse"][href="#' + element.id + '"],' +
                           '[data-toggle="collapse"][data-target="#' + element.id + '"]')
    this.transitioning = null

    if (this.options.parent) {
      this.$parent = this.getParent()
    } else {
      this.addAriaAndCollapsedClass(this.$element, this.$trigger)
    }

    if (this.options.toggle) this.toggle()
  }

  Collapse.VERSION  = '3.3.7'

  Collapse.TRANSITION_DURATION = 350

  Collapse.DEFAULTS = {
    toggle: true
  }

  Collapse.prototype.dimension = function () {
    var hasWidth = this.$element.hasClass('width')
    return hasWidth ? 'width' : 'height'
  }

  Collapse.prototype.show = function () {
    if (this.transitioning || this.$element.hasClass('in')) return

    var activesData
    var actives = this.$parent && this.$parent.children('.panel').children('.in, .collapsing')

    if (actives && actives.length) {
      activesData = actives.data('bs.collapse')
      if (activesData && activesData.transitioning) return
    }

    var startEvent = $.Event('show.bs.collapse')
    this.$element.trigger(startEvent)
    if (startEvent.isDefaultPrevented()) return

    if (actives && actives.length) {
      Plugin.call(actives, 'hide')
      activesData || actives.data('bs.collapse', null)
    }

    var dimension = this.dimension()

    this.$element
      .removeClass('collapse')
      .addClass('collapsing')[dimension](0)
      .attr('aria-expanded', true)

    this.$trigger
      .removeClass('collapsed')
      .attr('aria-expanded', true)

    this.transitioning = 1

    var complete = function () {
      this.$element
        .removeClass('collapsing')
        .addClass('collapse in')[dimension]('')
      this.transitioning = 0
      this.$element
        .trigger('shown.bs.collapse')
    }

    if (!$.support.transition) return complete.call(this)

    var scrollSize = $.camelCase(['scroll', dimension].join('-'))

    this.$element
      .one('bsTransitionEnd', $.proxy(complete, this))
      .emulateTransitionEnd(Collapse.TRANSITION_DURATION)[dimension](this.$element[0][scrollSize])
  }

  Collapse.prototype.hide = function () {
    if (this.transitioning || !this.$element.hasClass('in')) return

    var startEvent = $.Event('hide.bs.collapse')
    this.$element.trigger(startEvent)
    if (startEvent.isDefaultPrevented()) return

    var dimension = this.dimension()

    this.$element[dimension](this.$element[dimension]())[0].offsetHeight

    this.$element
      .addClass('collapsing')
      .removeClass('collapse in')
      .attr('aria-expanded', false)

    this.$trigger
      .addClass('collapsed')
      .attr('aria-expanded', false)

    this.transitioning = 1

    var complete = function () {
      this.transitioning = 0
      this.$element
        .removeClass('collapsing')
        .addClass('collapse')
        .trigger('hidden.bs.collapse')
    }

    if (!$.support.transition) return complete.call(this)

    this.$element
      [dimension](0)
      .one('bsTransitionEnd', $.proxy(complete, this))
      .emulateTransitionEnd(Collapse.TRANSITION_DURATION)
  }

  Collapse.prototype.toggle = function () {
    this[this.$element.hasClass('in') ? 'hide' : 'show']()
  }

  Collapse.prototype.getParent = function () {
    return $(this.options.parent)
      .find('[data-toggle="collapse"][data-parent="' + this.options.parent + '"]')
      .each($.proxy(function (i, element) {
        var $element = $(element)
        this.addAriaAndCollapsedClass(getTargetFromTrigger($element), $element)
      }, this))
      .end()
  }

  Collapse.prototype.addAriaAndCollapsedClass = function ($element, $trigger) {
    var isOpen = $element.hasClass('in')

    $element.attr('aria-expanded', isOpen)
    $trigger
      .toggleClass('collapsed', !isOpen)
      .attr('aria-expanded', isOpen)
  }

  function getTargetFromTrigger($trigger) {
    var href
    var target = $trigger.attr('data-target')
      || (href = $trigger.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '') // strip for ie7

    return $(target)
  }


  // COLLAPSE PLUGIN DEFINITION
  // ==========================

  function Plugin(option) {
    return this.each(function () {
      var $this   = $(this)
      var data    = $this.data('bs.collapse')
      var options = $.extend({}, Collapse.DEFAULTS, $this.data(), typeof option == 'object' && option)

      if (!data && options.toggle && /show|hide/.test(option)) options.toggle = false
      if (!data) $this.data('bs.collapse', (data = new Collapse(this, options)))
      if (typeof option == 'string') data[option]()
    })
  }

  var old = $.fn.collapse

  $.fn.collapse             = Plugin
  $.fn.collapse.Constructor = Collapse


  // COLLAPSE NO CONFLICT
  // ====================

  $.fn.collapse.noConflict = function () {
    $.fn.collapse = old
    return this
  }


  // COLLAPSE DATA-API
  // =================

  $(document).on('click.bs.collapse.data-api', '[data-toggle="collapse"]', function (e) {
    var $this   = $(this)

    if (!$this.attr('data-target')) e.preventDefault()

    var $target = getTargetFromTrigger($this)
    var data    = $target.data('bs.collapse')
    var option  = data ? 'toggle' : $this.data()

    Plugin.call($target, option)
  })

}(jQuery);
</script>
<script>
window.initializeCodeFolding = function(show) {

  // handlers for show-all and hide all
  $("#rmd-show-all-code").click(function() {
    // close the dropdown menu when an option is clicked
    $("#allCodeButton").dropdown("toggle");
    $('div.r-code-collapse').each(function() {
      $(this).collapse('show');
    });
  });
  $("#rmd-hide-all-code").click(function() {
    // close the dropdown menu when an option is clicked
    $("#allCodeButton").dropdown("toggle");
    $('div.r-code-collapse').each(function() {
      $(this).collapse('hide');
    });
  });

  // index for unique code element ids
  var currentIndex = 1;

  // select all R code blocks
  var rCodeBlocks = $('pre.sourceCode, pre.r, pre.python, pre.bash, pre.sql, pre.cpp, pre.stan');
  rCodeBlocks.each(function() {

    // if code block has been labeled with class `fold-show`, show the code on init!
    var classList = $(this).attr('class').split(/\s+/);
    for (var i = 0; i < classList.length; i++) {
    if (classList[i] === 'fold-show') {
        show = true;
      }
    }

    // create a collapsable div to wrap the code in
    var div = $('<div class="collapse r-code-collapse"></div>');
    if (show)
      div.addClass('in');
    var id = 'rcode-643E0F36' + currentIndex++;
    div.attr('id', id);
    $(this).before(div);
    $(this).detach().appendTo(div);

    // add a show code button right above
    var showCodeText = $('<span>' + (show ? 'Hide' : 'Code') + '</span>');
    var showCodeButton = $('<button type="button" class="btn btn-default btn-xs code-folding-btn pull-right"></button>');
    showCodeButton.append(showCodeText);
    showCodeButton
        .attr('data-toggle', 'collapse')
        .attr('data-target', '#' + id)
        .attr('aria-expanded', show)
        .attr('aria-controls', id);

    var buttonRow = $('<div class="row"></div>');
    var buttonCol = $('<div class="col-md-12"></div>');

    buttonCol.append(showCodeButton);
    buttonRow.append(buttonCol);

    div.before(buttonRow);

    // hack: return show to false, otherwise all next codeBlocks will be shown!
    show = false;

    // update state of button on show/hide
    div.on('hidden.bs.collapse', function () {
      showCodeText.text('Code');
    });
    div.on('show.bs.collapse', function () {
      showCodeText.text('Hide');
    });
  });

}
</script>
<script>
/* ========================================================================
 * Bootstrap: dropdown.js v3.3.7
 * http://getbootstrap.com/javascript/#dropdowns
 * ========================================================================
 * Copyright 2011-2016 Twitter, Inc.
 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
 * ======================================================================== */


+function ($) {
  'use strict';

  // DROPDOWN CLASS DEFINITION
  // =========================

  var backdrop = '.dropdown-backdrop'
  var toggle   = '[data-toggle="dropdown"]'
  var Dropdown = function (element) {
    $(element).on('click.bs.dropdown', this.toggle)
  }

  Dropdown.VERSION = '3.3.7'

  function getParent($this) {
    var selector = $this.attr('data-target')

    if (!selector) {
      selector = $this.attr('href')
      selector = selector && /#[A-Za-z]/.test(selector) && selector.replace(/.*(?=#[^\s]*$)/, '') // strip for ie7
    }

    var $parent = selector && $(selector)

    return $parent && $parent.length ? $parent : $this.parent()
  }

  function clearMenus(e) {
    if (e && e.which === 3) return
    $(backdrop).remove()
    $(toggle).each(function () {
      var $this         = $(this)
      var $parent       = getParent($this)
      var relatedTarget = { relatedTarget: this }

      if (!$parent.hasClass('open')) return

      if (e && e.type == 'click' && /input|textarea/i.test(e.target.tagName) && $.contains($parent[0], e.target)) return

      $parent.trigger(e = $.Event('hide.bs.dropdown', relatedTarget))

      if (e.isDefaultPrevented()) return

      $this.attr('aria-expanded', 'false')
      $parent.removeClass('open').trigger($.Event('hidden.bs.dropdown', relatedTarget))
    })
  }

  Dropdown.prototype.toggle = function (e) {
    var $this = $(this)

    if ($this.is('.disabled, :disabled')) return

    var $parent  = getParent($this)
    var isActive = $parent.hasClass('open')

    clearMenus()

    if (!isActive) {
      if ('ontouchstart' in document.documentElement && !$parent.closest('.navbar-nav').length) {
        // if mobile we use a backdrop because click events don't delegate
        $(document.createElement('div'))
          .addClass('dropdown-backdrop')
          .insertAfter($(this))
          .on('click', clearMenus)
      }

      var relatedTarget = { relatedTarget: this }
      $parent.trigger(e = $.Event('show.bs.dropdown', relatedTarget))

      if (e.isDefaultPrevented()) return

      $this
        .trigger('focus')
        .attr('aria-expanded', 'true')

      $parent
        .toggleClass('open')
        .trigger($.Event('shown.bs.dropdown', relatedTarget))
    }

    return false
  }

  Dropdown.prototype.keydown = function (e) {
    if (!/(38|40|27|32)/.test(e.which) || /input|textarea/i.test(e.target.tagName)) return

    var $this = $(this)

    e.preventDefault()
    e.stopPropagation()

    if ($this.is('.disabled, :disabled')) return

    var $parent  = getParent($this)
    var isActive = $parent.hasClass('open')

    if (!isActive && e.which != 27 || isActive && e.which == 27) {
      if (e.which == 27) $parent.find(toggle).trigger('focus')
      return $this.trigger('click')
    }

    var desc = ' li:not(.disabled):visible a'
    var $items = $parent.find('.dropdown-menu' + desc)

    if (!$items.length) return

    var index = $items.index(e.target)

    if (e.which == 38 && index > 0)                 index--         // up
    if (e.which == 40 && index < $items.length - 1) index++         // down
    if (!~index)                                    index = 0

    $items.eq(index).trigger('focus')
  }


  // DROPDOWN PLUGIN DEFINITION
  // ==========================

  function Plugin(option) {
    return this.each(function () {
      var $this = $(this)
      var data  = $this.data('bs.dropdown')

      if (!data) $this.data('bs.dropdown', (data = new Dropdown(this)))
      if (typeof option == 'string') data[option].call($this)
    })
  }

  var old = $.fn.dropdown

  $.fn.dropdown             = Plugin
  $.fn.dropdown.Constructor = Dropdown


  // DROPDOWN NO CONFLICT
  // ====================

  $.fn.dropdown.noConflict = function () {
    $.fn.dropdown = old
    return this
  }


  // APPLY TO STANDARD DROPDOWN ELEMENTS
  // ===================================

  $(document)
    .on('click.bs.dropdown.data-api', clearMenus)
    .on('click.bs.dropdown.data-api', '.dropdown form', function (e) { e.stopPropagation() })
    .on('click.bs.dropdown.data-api', toggle, Dropdown.prototype.toggle)
    .on('keydown.bs.dropdown.data-api', toggle, Dropdown.prototype.keydown)
    .on('keydown.bs.dropdown.data-api', '.dropdown-menu', Dropdown.prototype.keydown)

}(jQuery);
</script>
<style type="text/css">
.code-folding-btn {
  margin-bottom: 4px;
}

.row { display: flex; }
.collapse { display: none; }
.in { display:block }
.pull-right > .dropdown-menu {
    right: 0;
    left: auto;
}

.dropdown-menu {
    position: absolute;
    top: 100%;
    left: 0;
    z-index: 1000;
    display: none;
    float: left;
    min-width: 160px;
    padding: 5px 0;
    margin: 2px 0 0;
    font-size: 14px;
    text-align: left;
    list-style: none;
    background-color: #fff;
    -webkit-background-clip: padding-box;
    background-clip: padding-box;
    border: 1px solid #ccc;
    border: 1px solid rgba(0,0,0,.15);
    border-radius: 4px;
    -webkit-box-shadow: 0 6px 12px rgba(0,0,0,.175);
    box-shadow: 0 6px 12px rgba(0,0,0,.175);
}

.open > .dropdown-menu {
    display: block;
    color: #ffffff;
    background-color: #ffffff;
    background-image: none;
    border-color: #92897e;
}

.dropdown-menu > li > a {
  display: block;
  padding: 3px 20px;
  clear: both;
  font-weight: 400;
  line-height: 1.42857143;
  color: #000000;
  white-space: nowrap;
}

.dropdown-menu > li > a:hover,
.dropdown-menu > li > a:focus {
  color: #ffffff;
  text-decoration: none;
  background-color: #e95420;
}

.dropdown-menu > .active > a,
.dropdown-menu > .active > a:hover,
.dropdown-menu > .active > a:focus {
  color: #ffffff;
  text-decoration: none;
  background-color: #e95420;
  outline: 0;
}
.dropdown-menu > .disabled > a,
.dropdown-menu > .disabled > a:hover,
.dropdown-menu > .disabled > a:focus {
  color: #aea79f;
}

.dropdown-menu > .disabled > a:hover,
.dropdown-menu > .disabled > a:focus {
  text-decoration: none;
  cursor: not-allowed;
  background-color: transparent;
  background-image: none;
  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
}

.btn {
  display: inline-block;
  margin-bottom: 1;
  font-weight: normal;
  text-align: center;
  white-space: nowrap;
  vertical-align: middle;
  -ms-touch-action: manipulation;
      touch-action: manipulation;
  cursor: pointer;
  background-image: none;
  border: 1px solid transparent;
  padding: 4px 8px;
  font-size: 14px;
  line-height: 1.42857143;
  border-radius: 4px;
  -webkit-user-select: none;
  -moz-user-select: none;
  -ms-user-select: none;
  user-select: none;
}

.btn:focus,
.btn:active:focus,
.btn.active:focus,
.btn.focus,
.btn:active.focus,
.btn.active.focus {
  outline: 5px auto -webkit-focus-ring-color;
  outline-offset: -2px;
}
.btn:hover,
.btn:focus,
.btn.focus {
  color: #ffffff;
  text-decoration: none;
}
.btn:active,
.btn.active {
  background-image: none;
  outline: 0;
  box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);
}
.btn.disabled,
.btn[disabled],
fieldset[disabled] .btn {
  cursor: not-allowed;
  filter: alpha(opacity=65);
  opacity: 0.65;
  box-shadow: none;
}
a.btn.disabled,
fieldset[disabled] a.btn {
  pointer-events: none;
}
.btn-default {
  color: #ffffff;
  background-color: #aea79f; #important
  border-color: #aea79f;
}

.btn-default:focus,
.btn-default.focus {
  color: #ffffff;
  background-color: #978e83;
  border-color: #6f675e;
}

.btn-default:hover {
  color: #ffffff;
  background-color: #978e83;
  border-color: #92897e;
}
.btn-default:active,
.btn-default.active,
.btn-group > .btn:not(:first-child):not(:last-child):not(.dropdown-toggle) {
  border-radius: 0;
}
.btn-group > .btn:first-child {
  margin-left: 0;
}
.btn-group > .btn:first-child:not(:last-child):not(.dropdown-toggle) {
  border-top-right-radius: 0;
  border-bottom-right-radius: 0;
}
.btn-group > .btn:last-child:not(:first-child),
.btn-group > .dropdown-toggle:not(:first-child) {
  border-top-left-radius: 0;
  border-bottom-left-radius: 0;
}
.btn-group > .btn-group {
  float: left;
}
.btn-group > .btn-group:not(:first-child):not(:last-child) > .btn {
  border-radius: 0;
}
.btn-group > .btn-group:first-child:not(:last-child) > .btn:last-child,
.btn-group > .btn-group:first-child:not(:last-child) > .dropdown-toggle {
  border-top-right-radius: 0;
  border-bottom-right-radius: 0;
}
.btn-group > .btn-group:last-child:not(:first-child) > .btn:first-child {
  border-top-left-radius: 0;
  border-bottom-left-radius: 0;
}
.btn-group .dropdown-toggle:active,
.btn-group.open .dropdown-toggle {
  outline: 0;
}
.btn-group > .btn + .dropdown-toggle {
  padding-right: 8px;
  padding-left: 8px;
}
.btn-group > .btn-lg + .dropdown-toggle {
  padding-right: 12px;
  padding-left: 12px;
}
.btn-group.open .dropdown-toggle {
  box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);
}
.btn-group.open .dropdown-toggle.btn-link {
  box-shadow: none;
}

</style>
<script>
var str = '<div class="btn-group pull-right" style="position: fixed; right: 50px; top: 10px; z-index: 200"><button type="button" class="btn btn-default btn-xs dropdown-toggle" id="allCodeButton" data-toggle="dropdown" aria-haspopup="true" aria-expanded="true" data-_extension-text-contrast=""><span>Code</span> <span class="caret"></span></button><ul class="dropdown-menu" style="min-width: 50px;"><li><a id="rmd-show-all-code" href="#">Show All Code</a></li><li><a id="rmd-hide-all-code" href="#">Hide All Code</a></li></ul></div>';
document.write(str);
</script>
<script>
$(document).ready(function () {
  window.initializeCodeFolding("show" === "hide");
});
</script>
