R: Manipulate with RNNI Tree Space

# Manipulate with RNNI Tree Space

## Documentation for package ‘rrnni’ version 0.1.1

- DESCRIPTION file
- Package README

## Help Pages

as_ranked | Convert a tree to ranked tree
common_tips | Find shared tip labels
keep_tips | Prune a tree
keep_tips.multiPhylo | Prune a tree
keep_tips.phylo | Prune a tree
keep_tips.rankedPhylo | Prune a tree
random_tree | Create a random ranked phylogeny
rankedPhylo | Create a ranked tree
rankedPhylo.character | Create a ranked tree
rankedPhylo.default | Create a ranked tree
rankedPhylo.multiPhylo | Create a ranked tree
rankedPhylo.numeric | Create a ranked tree
rankedPhylo.phylo | Create a ranked tree
read_newick | Read a newick tree
rnni | Calculate RNNI distance
sort_tips | Sort tip labels
sort_tips.multiPhylo | Sort tip labels
sort_tips.phylo | Sort tip labels
tips | Extract tips from tree
tips.multiPhylo | Extract tips from tree
tips.phylo | Extract tips from tree