R: An Alternative Advanced Normalization Tools ('ANTs')

# An Alternative Advanced Normalization Tools ('ANTs')

## Documentation for package ‘rpyANTs’ version 0.0.6

- DESCRIPTION file
- Package NEWS
- Package README

## Help Pages

ants | Get 'ANTsPy' module
antspynet | Get "ANTsPyNet" module
antspynet_brain_extraction | Extract brain and strip skull
antspynet_deep_atropos | Imaging segmentation using 'antspynet'
antspynet_desikan_killiany_tourville_labeling | Imaging segmentation using 'antspynet'
antspynet_preprocess_brain_image | Process brain image prior to segmentation
antspynet_segmentation | Imaging segmentation using 'antspynet'
ants_apply_transforms | Apply a transform list to map an image from one domain to another
ants_apply_transforms_to_points | Apply a transform list to map points from one domain to another
ants_available | Check if 'ANTs' is available
ants_motion_correction | Motion correction
ants_plot | Plot single "ANTsImage"
ants_plot_grid | Plot multiple "ANTsImage"
ants_registration | Register two images using 'ANTs'
ants_resample_image | Resample image
as_ANTsImage | Load data as "ANTsImage" class
as_ANTsTransform | Convert to "ANTsTransform"
as_ANTsTransform.ants.core.ants_image.ANTsImage | Convert to "ANTsTransform"
as_ANTsTransform.ants.core.ants_transform.ANTsTransform | Convert to "ANTsTransform"
as_ANTsTransform.character | Convert to "ANTsTransform"
as_ANTsTransform.default | Convert to "ANTsTransform"
as_ANTsTransform.numpy.ndarray | Convert to "ANTsTransform"
brain_extraction | Extract brain and strip skull
brain_mask | Extract brain and strip skull
correct_intensity | Truncate and correct 'MRI' intensity
ensure_template | Ensure the template directory is downloaded
extract_coregistration | Extract transform in right-anterior-superior coordinate system
halpern_apply_transform_template_mri | 'ANTs' functions for 'Halpern' lab
halpern_preprocess | 'ANTs' functions for 'Halpern' lab
halpern_register_ct_mri | 'ANTs' functions for 'Halpern' lab
halpern_register_template_mri | 'ANTs' functions for 'Halpern' lab
install_ants | Install 'ANTs' via 'ANTsPy'
is_affine3D | Check if an object is a 3D 'affine' transform matrix
is_affine3D.ants.core.ants_transform.ANTsTransform | Check if an object is a 3D 'affine' transform matrix
is_affine3D.default | Check if an object is a 3D 'affine' transform matrix
load_ants | Get 'ANTsPy' module
load_antspynet | Get "ANTsPyNet" module
py | Get 'Python' main process environment
py_builtin | Get 'Python' built-in object
py_list | List in 'Python'
py_slice | Slice index in 'Python' arrays
t1_preprocess | Process 'T1' image