R: R for High-Dimensional Molecular Data

# R for High-Dimensional Molecular Data

## Documentation for package ‘romic’ version 1.3.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

add_pcs | Add PCA Loadings
app_flow | Flow
app_heatmap | Interactive Heatmap
app_pcs | PC Plot
brauer_2008 | Brauer 2008
brauer_2008_tidy | Brauer 2008
brauer_2008_triple | Brauer 2008
calculate_sample_mahalanobis_distances | Calculate Sample Mahalanobis Distances
center_tomic | Center T* Omic
check_design | Check Design
check_tidy_omic | Check Tidy Omic
check_tomic | Check T*Omic
check_triple_omic | Check Triple Omic
convert_wide_to_tidy_omic | Convert Wide to Tidy Omic
create_tidy_omic | Create Tidy Omic
create_triple_omic | Create Triple Omic
downsample_heatmap | Downsample Heatmap
export_tomic_as_tidy | Export T*Omic in Tidy Format
export_tomic_as_triple | Export T*Omic as Triple
export_tomic_as_wide | Export T*Omic as Wide Data
filterInput | Filter Input
filterServer | Filter Server
filter_tomic | Filter T* Omics
format_names_for_plotting | Format Names for Plotting
get_design_tbl | Get Design Table
get_tomic_table | Get Tomic Table
ggBivOutput | ggBivariate Output
ggBivServer | ggBivariate Server
ggplotOutput | ggplot Output
ggplotServer | ggplot Server
ggUnivOutput | ggUnivariate Output
ggUnivServer | ggUnivariate Server
hclust_order | Hierarchical clustering order
impute_missing_values | Impute Missing Values
infer_tomic_table_type | Infer Tomic Table Type
lassoInput | Lasso Input
lassoServer | Lasso Server
organizeInput | Organize Input
organizeServer | Organize Servers
plotsaverInput | Plot Saver Input
plotsaverServer | Plot Saver Server
plot_bivariate | Bivariate Plot
plot_heatmap | Plot Heatmap
plot_missing_values | Plot Missing Values
plot_univariate | Univariate Plot
prepare_example_datasets | Prepare Example Datasets
reconcile_triple_omic | Reconcile Triple Omic
reform_tidy_omic | Reform Tidy Omic
remove_missing_values | Remove Missing Values
shiny_filter_test | Shiny Filter Test
shiny_ggbiv_test | Shiny ggBivariate Test
shiny_ggplot_test | Shiny ggplot Test
shiny_gguniv_test | Shiny ggUnivariate Test
shiny_lasso_test | Shiny Lasso Test
shiny_lasso_test_reactval | Shiny Lasso Test w/ Reactive Values
shiny_organize_test | Shiny Organize Test
shiny_plotsaver_test | Shiny Plot Saver Test
shiny_sort_test | Shiny Sort Test
sortInput | Sort Input
sortServer | Sort Server
sort_tomic | Sort Triple Omic
sort_triple_arrange | Sort Triple Arrange
sort_triple_hclust | Sort Triple Hclust
tidy_to_triple | Tidy omic to triple omic
tomic_sort_status | T* Omic Sort Status
tomic_to | T* Omic To
tomic_to_matrix | Tomic To Matrix
triple_to_tidy | Triple Omic to Tidy Omic
try_brushedPoints | Try brushedPoints
update_sample_factors | Update Sample Factors
update_tidy_omic | Update Tidy Omic
update_tomic | Update T* Omic
var_partial_match | Var Partial Match