# Generated by roxygen2: do not edit by hand

S3method(print,BEDAinfo)
S3method(rowscale,matrix)
S3method(rowscale,table)
S3method(rrank,default)
S3method(rrank,matrix)
export(allIdentical)
export(apply1)
export(apply2)
export(applyTopOrIncAndNotExclFilter)
export(asNumMatrix)
export(assertColumnName)
export(assertContrast)
export(assertDesign)
export(assertDesignContrast)
export(assertDir)
export(assertFile)
export(basefilename)
export(bedaInfo)
export(biomicsPstorePath2URL)
export(bound)
export(boundNorm)
export(cbindByRownames)
export(checkDir)
export(checkFile)
export(chosenFew)
export(clearLog)
export(closeLoggerConnections)
export(columnOverlapCoefficient)
export(compTwoVecs)
export(corByRownames)
export(countTokens)
export(createDir)
export(cumJaccardDistance)
export(cumJaccardIndex)
export(cumOverlapCoefficient)
export(cumOverlapDistance)
export(cumsumprop)
export(cutInterval)
export(cutreeIntoOrderedGroups)
export(dfFactor)
export(dfFactor2Str)
export(doLog)
export(equateWellLabelWidth)
export(extname)
export(firstUp)
export(fixWidthStr)
export(flushLog)
export(haltifnot)
export(headhead)
export(headtail)
export(identicalMatrix)
export(identicalMatrixValue)
export(imatch)
export(imatchv)
export(invertList)
export(ipmatch)
export(ipmatchv)
export(isDebugging)
export(isDir)
export(isError)
export(isEven)
export(isIntDebugging)
export(isInvarCol)
export(isMaxStatRow)
export(isOdd)
export(isRocheCompoundID)
export(isTopOrIncAndNotExcl)
export(isVarCol)
export(jaccardDistance)
export(jaccardIndex)
export(keepMaxStatRow)
export(keepMaxStatRowInd)
export(lastChar)
export(libordie)
export(list2df)
export(listOverlapCoefficient)
export(longdf2matrix)
export(matchColumn)
export(matchColumnIndex)
export(matchColumnName)
export(matchv)
export(matrix2longdf)
export(mergeInfreqLevelsByCumsumprop)
export(midentical)
export(mintersect)
export(mmatch)
export(mset)
export(msetdiff)
export(munion)
export(nField)
export(na.false)
export(naivePairwiseDist)
export(ofactor)
export(overlapCoefficient)
export(overlapDistance)
export(overwriteDir)
export(pAbsLog10Score)
export(pQnormScore)
export(pScore)
export(pairwiseJaccardDistance)
export(pairwiseJaccardIndex)
export(pairwiseOverlapCoefficient)
export(pairwiseOverlapDistance)
export(percentage)
export(putColsFirst)
export(pwdecode)
export(pwencode)
export(qqmsg)
export(qsystem)
export(rbindByColnames)
export(refactorNum)
export(registerLog)
export(relevels)
export(relevelsByNamedVec)
export(relevelsByNotNamedVec)
export(reload)
export(removeColumns)
export(removeColumnsByFunc)
export(removeColumnsWithNA)
export(removeInvarCol)
export(removeRowsByFunc)
export(removeRowsWithNA)
export(replaceColumnName)
export(replaceZeroPvalue)
export(ribiosTempdir)
export(ribiosTempfile)
export(rmat)
export(rocheCore)
export(rowscale)
export(rrank)
export(rrankInd)
export(rsetdiff)
export(scriptInit)
export(setDebug)
export(shortenRocheCompoundID)
export(shortenStr)
export(silencio)
export(sortAndFilterByCumsumprop)
export(sortByCol)
export(sortByDimnames)
export(strtoken)
export(stubborngc)
export(subsetByColumnName)
export(summarizeCols)
export(summarizeColumns)
export(summarizeRows)
export(tailtail)
export(trim)
export(ulen)
export(uniqueLength)
export(uniqueNonNA)
export(unsetDebug)
export(verbose)
export(wellIndex2position)
export(whoami)
export(writeLog)
importFrom(methods,is)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,qnorm)
importFrom(stats,relevel)
importFrom(utils,assignInNamespace)
importFrom(utils,getFromNamespace)
importFrom(utils,packageDescription)
useDynLib(ribiosUtils, .registration=TRUE, .fixes="C_")
