add_censor_marks        Add censor marks to KM plot
add_cif_hazard_ratios   Add CIF Hazard Ratios to Strata Labels
add_confidence_bands    Add confidence bands to plot
add_km_hazard_ratios    Add hazard ratios to strata labels
add_median_lines        Add median survival lines to plot
add_median_text         Add median survival text to plot
add_set_time_lines      Add survival at set time lines to plot
add_set_time_text       Add survival at set time text to plot
add_statistical_tests   Add statistical test results to plot
apply_scales_and_guides
                        Apply colour and linetype scales
boxcoxfitRx             fit box cox transformed linear model
calculate_and_add_median_times
                        Calculate median survival times and add to
                        labels
calculate_and_add_time_specific_estimates
                        Calculate survival/CIF at specific time points
                        and add to labels
calculate_cif_median    Calculate Median Time to Event for CIF
calculate_cif_timepoints
                        Calculate CIF Estimates at Specific Time Points
clear_labels            Clear variable labels from a data frame
covsum                  Get covariate summary dataframe
create_base_plot        Create base ggplot for survival curves
create_cif_dataframe    Create CIF Plotting Data Frame
create_cif_risk_table_sfit
                        Create Survival Fit for Risk Table in CIF
create_km_dataframe     Create plotting dataframe for KM curves
create_risk_table       Create risk table for survival plot
crrRx                   fit crr model
ctDNA                   Tumour size change over time Longitudinal
                        changes in tumour size since baseline for
                        patients by changes in ctDNA status (clearance,
                        decrease or increase) since baseline.
excelCol                Retrieve columns number from spreadsheet
                        columns specified as unquoted letters
excelColLetters         Retrieve spreadsheet column letter-names from
                        columns indices
extract_grays_test      Extract Gray's test results from CIF fit
extract_labels          Extract variable labels from labelled data
                        frame
extract_package_details
                        Extract Function and Package Information from
                        Current Document
fit_cif_model           Fit Competing Risks Model
fit_km_model            Fit Kaplan-Meier survival curves
forestplot2             Create a forest plot using ggplot2 (DEPRECATED)
forestplotMV            Create a multivariable forest plot using
                        ggplot2
forestplotUV            Create a univariable forest plot using ggplot2
forestplotUVMV          Combine univariable and multivariable forest
                        plot (DEPRECATED)
geoR_boxcoxfit          Parameter Estimation for the Box-Cox
                        Transformation
ggkmcif2                Plot KM and CIF curves with ggplot
ggkmcif2Parameters      Additional parameters passed to ggkmcif2
ggkmcif2_2025           Plot KM and CIF curves with ggplot
ggkmcif_paste           combine components of a call to ggkmci
hbld                    Bold strings for HTML output
lpvalue2                Format p-values for plot annotations
mvsum                   Get multivariate summary dataframe
nestTable               Combine two table columns into a single column
                        with levels of one nested within levels of the
                        other.
outTable                Print tables to PDF/Latex HTML or Word
pembrolizumab           Survival data Survival status and ctDNA levels
                        for patients receiving pembrolizumab
plotuv                  Plot multiple bivariate relationships in a
                        single plot
process_cif_medians     Process CIF Median Values
process_cif_timepoints
                        Process CIF Time-Specific Estimates
process_covariate       Process covariate variable (factor conversion,
                        numeric cutoffs)
replace_plot_labels     Replace variable names with labels in ggplot
rm_cifsum               Summarize cumulative incidence by group
rm_compactsum           Output a compact summary table
rm_covsum               Add header row to table Outputs a descriptive
                        covariate table
rm_mvsum                Format a regression model nicely for
                        'Rmarkdown'
rm_survdiff             Display event counts, expected event counts and
                        logrank test of differences
rm_survsum              Summarise survival data by group
rm_survtime             Display survival rates and events for specified
                        times
rm_uv_mv                Combine univariate and multivariable regression
                        tables
rm_uvsum                Output several univariate models nicely in a
                        single table
scrolling_table         Output a scrollable table
set_labels              Set variable labels
set_var_labels          Set variable labels
validate_and_prepare_data
                        Validate and prepare input data
