Package: readyomics
Type: Package
Title: Ready-to-Use Omics Formatting, Analysis, and Visualization
        Pipeline
Version: 0.2.0
Authors@R: 
    c(
      person(given = "Laura", 
             family = "Martinez-Gili", 
             role = c("cre", "aut", "cph"), 
             email = "martinez.gili.laura@gmail.com")
    )
Description: 
    Provides a flexible and streamlined pipeline for formatting, analyzing, and 
    visualizing omics data, regardless of omics type (e.g. transcriptomics, proteomics, 
    metabolomics). The package includes tools for shaping input data into analysis-ready 
    structures, fitting linear or mixed-effect models, extracting key contrasts, and 
    generating a rich variety of ready-to-use publication-quality plots. 
    Designed for transparency and reproducibility across a wide range of study designs, 
    with customizable components for statistical modeling.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Depends: R (>= 4.1.0)
Imports: dplyr, future, future.apply, ggplot2, lme4, lmerTest, methods,
        permute, rlang, stats, stringr, tidyr, utils, vegan,
        zCompositions
Suggests: ape, data.table, ggrepel, ggridges, IHW, imputeLCMD, knitr,
        phyloseq, progressr, purrr, qvalue, rmarkdown, ropls, scales,
        testthat (>= 3.0.0)
BugReports: https://github.com/lmartinezgili/readyomics/issues
URL: https://lmartinezgili.github.io/readyomics/,
        https://github.com/lmartinezgili/readyomics
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-10-20 09:28:17 UTC; laura
Author: Laura Martinez-Gili [cre, aut, cph]
Maintainer: Laura Martinez-Gili <martinez.gili.laura@gmail.com>
Repository: CRAN
Date/Publication: 2025-10-20 09:40:08 UTC
Built: R 4.6.0; ; 2026-04-26 20:59:28 UTC; unix
