adiv_boxplot            Visualize alpha diversity with boxplots.
adiv_corrplot           Visualize alpha diversity with scatterplots and
                        trendlines.
adiv_stats              Test alpha diversity for associations with
                        metadata.
adiv_table              Calculate the alpha diversity of each sample.
as.list.rbiom           Convert an rbiom object to a base R list.
as.matrix.rbiom         Convert an rbiom object to a simple count
                        matrix.
as_rbiom                Convert a variety of data types to an rbiom
                        object.
babies                  Longitudinal Stool Samples from Infants (n =
                        2,684)
bdiv_boxplot            Visualize BIOM data with boxplots.
bdiv_clusters           Cluster samples by beta diversity k-means.
bdiv_corrplot           Visualize beta diversity with scatterplots and
                        trendlines.
bdiv_heatmap            Display beta diversities in an all vs all grid.
bdiv_ord_plot           Ordinate samples and taxa on a 2D plane based
                        on beta diversity distances.
bdiv_ord_table          Calculate PCoA and other ordinations, including
                        taxa biplots and statistics.
bdiv_stats              Test beta diversity for associations with
                        metadata.
bdiv_table              Distance / dissimilarity between samples.
bdply                   Apply a function to each subset of an rbiom
                        object.
biom_inflate            Inflate Relative Abundances to Integer Counts
biom_merge              Combine several rbiom objects into one.
biom_relativize         Relativize Counts to Proportions
biom_rescale            Rescale Counts to a Specific Range
convert_to              Convert biom data to an external package class
distmat_ord_table       Run ordinations on a distance matrix.
distmat_stats           Run statistics on a distance matrix vs a
                        categorical or numeric variable.
export                  Export data to QIIME 2 or mothur.
gems                    Global Enteric Multicenter Study (n = 1,006)
glimpse.rbiom           Get a glimpse of your metadata.
hmp50                   Human Microbiome Project - demo dataset (n =
                        50)
matrix_ops              Deprecated matrix transformations
modify_metadata         Create, modify, and delete metadata fields.
plot_heatmap            Create a heatmap with tracks and dendrograms
                        from any matrix.
pull.rbiom              Map sample names to metadata field values.
rare_corrplot           Visualize rarefaction curves with scatterplots
                        and trendlines.
rare_multiplot          Combines rare_corrplot and rare_stacked into a
                        single figure.
rare_stacked            Visualize the number of observations per
                        sample.
rarefy                  Rarefy Counts to a Constant Depth
read_biom               Parse counts, metadata, taxonomy, and phylogeny
                        from a BIOM file.
read_fasta              Parse a fasta file into a named character
                        vector.
read_tree               Read a newick formatted phylogenetic tree.
sample_sums             Summarize the taxa observations in each sample.
slice_metadata          Subset to a specific number of samples.
stats_boxplot           Visualize categorical metadata effects on
                        numeric values.
stats_corrplot          Visualize regression with scatterplots and
                        trendlines.
stats_table             Run non-parametric statistics on a data.frame.
subset                  Subset an rbiom object by sample names, OTU
                        names, metadata, or taxonomy.
suggest_inflate_depths
                        Suggest Inflation Depths
suggest_rarefy_depth    Suggest Rarefaction Depth
taxa_boxplot            Visualize BIOM data with boxplots.
taxa_clusters           Cluster samples by taxa abundances k-means.
taxa_corrplot           Visualize taxa abundance with scatterplots and
                        trendlines.
taxa_heatmap            Display taxa abundances as a heatmap.
taxa_map                Map OTUs names to taxa names at a given rank.
taxa_stacked            Display taxa abundances as a stacked bar graph.
taxa_stats              Test taxa abundances for associations with
                        metadata.
taxa_sums               Get summary taxa abundances.
taxa_table              Taxa abundances per sample.
tree_subset             Create a subtree by specifying tips to keep.
with                    Evaluate expressions on metadata.
write_biom              Save an rbiom object to a file.
