# Generated by roxygen2: do not edit by hand

S3method(print,ratematrix_multi_chain)
S3method(print,ratematrix_multi_mcmc)
S3method(print,ratematrix_prior_function)
S3method(print,ratematrix_prior_sample)
S3method(print,ratematrix_single_chain)
S3method(print,ratematrix_single_mcmc)
export(checkConvergence)
export(computeESS)
export(continueMCMC)
export(estimateTimeMCMC)
export(extractCorrelation)
export(fastSimmap)
export(getStartPointFromPosterior)
export(likelihoodFunction)
export(logAnalyzer)
export(makePrior)
export(mergePosterior)
export(mergeSimmap)
export(plotPrior)
export(plotRatematrix)
export(plotRootValue)
export(ratematrixJointMCMC)
export(ratematrixMCMC)
export(readMCMC)
export(readMCMC_Mk)
export(samplePrior)
export(simRatematrix)
export(testRatematrix)
importFrom(MASS,mvrnorm)
importFrom(Rcpp,sourceCpp)
importFrom(ape,Nnode)
importFrom(ape,Ntip)
importFrom(ape,is.binary)
importFrom(ape,is.rooted)
importFrom(ape,is.ultrametric)
importFrom(ape,reorder.phylo)
importFrom(coda,effectiveSize)
importFrom(coda,gelman.diag)
importFrom(coda,heidel.diag)
importFrom(coda,mcmc)
importFrom(coda,mcmc.list)
importFrom(corpcor,decompose.cov)
importFrom(corpcor,rebuild.cov)
importFrom(geiger,as.Qmatrix.gfit)
importFrom(geiger,fitContinuous)
importFrom(geiger,fitDiscrete)
importFrom(geiger,treedata)
importFrom(mvMORPH,mvBM)
importFrom(phylolm,three.point.compute)
importFrom(readr,read_lines)
importFrom(stats,coef)
importFrom(stats,cov2cor)
importFrom(stats,rexp)
importFrom(stats,runif)
importFrom(stats,setNames)
useDynLib(ratematrix)
