SHD                     Structural Hamming Distance (SHD)
adjMat2Graph            Convert an adjacency matrix into a graph
allMetrics              Combined graph recovery metrics
bootstrap               Runs bootstrapping for a causal graph on the
                        dataset.
boss                    Runs the BOSS causal discovery algorithm on the
                        dataset
coxmgm                  Calculate the CoxMGM graph on a dataset.
coxmgmCV                Implements k-fold cross-validation for CoxMGM
coxmgmPath              Estimates a solution path for CoxMGM
cpdag                   Calculate the CPDAG for a given DAG
createKnowledge         A function to create a prior knowledge object
                        for use with causal discovery algorithms
fciCV                   Implements k-fold cross-validation for
                        FCI-Stable
fciStable               Runs the causal discovery algorithm FCI-Stable
                        on a dataset.
fciStars                Implements StARS for FCI-Stable
graphTable              A function to generate a data.frame for objects
                        from graph class. It incorporates adjacency and
                        orientation frequency if estimates of edge
                        stability are available.
grasp                   Runs the GRaSP causal discovery algorithm on
                        the dataset
growShrinkMB            Implements Grow-Shrink algorithm for Markov
                        blanket identification
loadGraph               Load a graph from a ".txt" file
mgm                     Calculate the Mixed Graphical Model (MGM) graph
                        on a dataset.
mgmCV                   Implements k-fold cross-validation for MGM
mgmPath                 Estimates a solution path for MGM
mgmfciCV                Implements k-fold cross-validation for
                        MGM-FCI-Stable
mgmpcCV                 Implements k-fold cross-validation for
                        MGM-PC-Stable
moral                   Calculate the moral graph for a given DAG
pag                     Calculate the PAG for a given DAG and set of
                        latent variables
pcCV                    Implements k-fold cross-validation for
                        PC-Stable
pcStable                Runs the causal discovery algorithm PC-Stable
                        on a dataset.
pcStars                 Implements StARS for PC-Stable
plot.graph              A plot override function for the graph class
plot.graphCV            A plot override function for the graphCV class
plot.graphPath          A plot override function for the graphPath
                        class
plot.graphSTARS         A plot override function for the graphSTARS
                        class
plot.graphSTEPS         A plot override function for the graphSTEPS
                        class
prMetrics               Combined adjaceny and orientation
                        precision-recall metrics
prMetricsAdjacency      Adjacency Precision-Recall Metrics
prMetricsCausal         Causal Orientaion Precision-Recall Metrics for
                        CPDAGs
prMetricsOrientation    Orientation Precision-Recall Metrics
print.graph             A print override function for the graph class
print.graphCV           A print override function for the graphCV class
print.graphPath         A print override function for the graphPath
                        class
print.graphSTARS        A print override function for the graphSTARS
                        class
print.graphSTEPS        A print override function for the graphSTEPS
                        class
print.knowledge         A print override function for the knowledge
                        class
printGraph              Display a graph object as text.
saveGraph               Save a graph to a file. Supported file types
                        are ".txt" and ".sif".
simRandomDAG            A function to simulate a random forward DAG
                        from a SEM model.
skeleton                Calculate the undirected skeleton for a given
                        DAG
steps                   Implements StEPS and StARS for MGM
