color_patterns_get      Set up col, pattern and group for plotting.
color_patterns_pheno    Set up col, pattern, shape and group for
                        plotting.
color_patterns_set      Set up colors for patterns or points
ggplot_coef             Plot QTL effects along chromosome
ggplot_genes            Plot gene locations for a genomic interval
ggplot_genes_internal   GGPlot internal routine for ggplot_genes
ggplot_listof_scan1coef
                        Plot of object of class listof_scan1coeff
ggplot_onegeno          Plot one individual's genome-wide genotypes
ggplot_peaks            Plot QTL peak locations
ggplot_pxg              Plot phenotype vs genotype
ggplot_scan1            Plot a genome scan
ggplot_snpasso          Plot SNP associations
listof_scan1coef        List of scan1coef objects
sdp_to_pattern          Convert sdp to pattern
summary_scan1           Summary of scan1 object
