Abstracts-class         Class '"Abstracts"' Abstract Class
BWI                     To obtain the Buzz Word Index of terms from the
                        Abstracts.
Find_conclusion         To find the conclusion from the abstract(s).
GeneToEntrez            Data containing Entrez Ids
Genewise                To Search the number of abstracts for Genes
Genewise-methods        method to find the abstracts for the given
                        gene.
Give_Sentences          To extract sentences from the Abstracts
Give_Sentences_PMC      To fetch the sentence from the PMC full text
                        article
HGNC-class              HGNC Class for package.
HGNC2UniprotID          R Data containing HGNC2UniprotID data mapping.
HGNCdata                R Data containing HGNC data.
SentenceToken           To Tokenize the sentences
Yearwise                To Search abstracts Year wise
Yearwise-methods        'Yearwise' Year wise extraction of Abstracts
additional_info         To extract sentences with nultiple keywords
                        from Abstracts
alias_fn                To extract sentences containing Alias of the
                        Human Genes from Pubmed abstracts.
altnamesfun             To Get Alternative names of Genes
cleanabs                To clean the result of searchabsL
cleanabs-methods        Methods for Function 'cleanabs'
cluster_words           To Find the highest frequency of words within
                        clusters
co_occurrence_advance   Extracts multiple sentence with co-occurrence
                        of two sets of terms)
co_occurrence_fn        Extracts sentences with co-occurrence of two
                        sets of terms
combineabs              To combine the abstracts
combineabs-methods      'Abstracts' Method to Combine Abstracts
common_words_new        R Data containing words which frequently in
                        text
contextSearch           For Context Search
contextSearch-methods   Method for Context Search
cos_sim_calc            To calculate the cosine similarity between
                        terms.
cos_sim_calc_boot       Cosine Similarity Calculation by Boot Strapping
currentabs_fn           To Retrive the Abstracts for year.
find_intro_conc_html    To find the introduction and conclusion from
                        the abstracts.
gene_atomization        To Extract Genes from the Abstracts
genes_BWI               Function to obtain the Buzz Word Index of Genes
                        from the abstracts.
get_DOIs                function for extracting Digital Object
                        Identifier (DOIs) of papers
get_MedlinePlus         To Get MedLinePlus Summary
get_NMids               To extract NM ids from NCBI.
get_PMCIDS              To extract the PMC Ids of the abstracts.
get_PMCtable            To fetch the given PMC article tables.
                        Deprecated
get_Sequences           To extract the Gene sequence from the NCBI.
get_gene_sentences      To extract the sentences for genes from the
                        corpus.
get_original_term       To get the original terms from the corpus.
                        deprecated
get_original_term2      To get the original terms from the corpus.
getabs                  To get Abstracts for a given term.
getabs-methods          'getabs' To Get abstracts for a term
getabsT                 To get Abstracts for a given term.
getabsT-methods         To Get Abstracts
head_abbrev             To extract the abbreviated term.
input_for_find_intro_conc_html
                        fetch the abstracts using E-utilities.
local_uniprotfun        To Get Information from Uniprot.
names_fn                To extract the sentences in asbtracts
                        containing gene names from HGNC.
new_xmlreadabs          To read the abstracts from the PubMed saved in
                        XML format.
official_fn             To extract the sentences containing official
                        gene symbol from abstracts.
pmids_to_abstracts      To Find and match the PMIDs to the abstracts.
previousabs_fn          To Retrieve the Abstracts from the large corpus
                        for given years.
prevsymbol_fn           To extract the sentences containing Previous
                        symbols of HGNC genes.
printabs                To prind the total number of abstracts in an S4
                        object of class Abstracts , its start and end
pubtator3_function      function for text annotation using PubTator
pubtator_function       function for text annotation using
                        PubTator.Deprecated.
pubtator_function_JSON
                        function for text annotation using PubTator
pubtator_result_list_to_table
                        Function to Convert Pubtator result from list
                        into Table
readabs                 To read Abstracts
readabsnew              To read Abstracts
ready                   To Initiate the Classes.
removeabs               To remove abstracts for the query term.
removeabs-methods       'removeabs' To remove abstracts of a term from
                        the data.
searchabsL              To Search the abstracts of term(s) in a
                        combination mode.
searchabsL-methods      Searching Abstracts
searchabsT              To Search Abstracts
searchabsT-methods      'searchabsT' Searching abstracts
sendabs                 To send abstracts
sendabs-methods         To send the Data into a File
space_quasher           Removes extra spaces between words.
subabs                  To find sub-abstracts
subabs-methods          Getting subabstracts
subsetabs               To make subsets of large corpus.
subsetabs-methods       To make subset of Abstracts.
tdm_for_lsa             create Term Document Matrix for lsa analysis
uniprotfun              To get information about gene from the
                        UniProt.Deprecated.
whichcluster            To fetch the cluster for words
word_associations       Extracts the words associated (to the left and
                        to the right) with a given word
word_atomizations       Atomization of words
wordscluster            To cluster the words
wordsclusterview        To view the words in cluster
xmlgene_atomizations    Gene atomization of xml abstracts.Deprecated.
xmlgene_atomizations_new
                        Gene atomization of xml abstracts.
xmlreadabs              To read the abstracts from the PubMed saved in
                        XML format.
xmlword_atomizations    Word atomizations of abstracts from xml format.
