ConservationModifier-class
                        Conservation problem modifier class
ConservationProblem-class
                        Conservation problem class
Constraint-class        Constraint class
Decision-class          Decision class
Objective-class         Objective class
OptimizationProblem-class
                        Optimization problem class
OptimizationProblem-methods
                        Optimization problem methods
Penalty-class           Penalty class
Portfolio-class         Portfolio class
Solver-class            Solver class
Target-class            Target class
TargetMethod-class      Target setting method class
Weight-class            Weight class
add_absolute_targets    Add absolute targets
add_asym_connectivity_penalties
                        Add asymmetric connectivity penalties
add_auto_targets        Add targets automatically
add_binary_decisions    Add binary decisions
add_boundary_penalties
                        Add boundary penalties
add_cbc_solver          Add a _CBC_ solver
add_connectivity_penalties
                        Add connectivity penalties
add_contiguity_constraints
                        Add contiguity constraints
add_cplex_solver        Add a _CPLEX_ solver
add_cuts_portfolio      Add Bender's cuts portfolio
add_default_portfolio   Add a default portfolio
add_default_solver      Add default solver
add_extra_portfolio     Add an extra portfolio
add_feature_contiguity_constraints
                        Add feature contiguity constraints
add_feature_weights     Add feature weights
add_gap_portfolio       Add a gap portfolio
add_group_targets       Add targets based on feature groups
add_gurobi_solver       Add a _Gurobi_ solver
add_highs_solver        Add a _HiGHS_ solver
add_linear_constraints
                        Add linear constraints
add_linear_penalties    Add linear penalties
add_locked_in_constraints
                        Add locked in constraints
add_locked_out_constraints
                        Add locked out constraints
add_lsymphony_solver    Add a _SYMPHONY_ solver with _lpsymphony_
add_mandatory_allocation_constraints
                        Add mandatory allocation constraints
add_manual_bounded_constraints
                        Add manually specified bound constraints
add_manual_locked_constraints
                        Add manually specified locked constraints
add_manual_targets      Add manual targets
add_max_cover_objective
                        Add maximum coverage objective
add_max_features_objective
                        Add maximum feature representation objective
add_max_phylo_div_objective
                        Add maximum phylogenetic diversity objective
add_max_phylo_end_objective
                        Add maximum phylogenetic endemism objective
add_max_utility_objective
                        Add maximum utility objective
add_min_largest_shortfall_objective
                        Add minimum largest shortfall objective
add_min_penalties_objective
                        Add minimum penalties objective
add_min_set_objective   Add minimum set objective
add_min_shortfall_objective
                        Add minimum shortfall objective
add_neighbor_constraints
                        Add neighbor constraints
add_neighbor_penalties
                        Add neighbor penalties
add_proportion_decisions
                        Add proportion decisions
add_relative_targets    Add relative targets
add_rsymphony_solver    Add a _SYMPHONY_ solver with _Rsymphony_
add_semicontinuous_decisions
                        Add semi-continuous decisions
add_shuffle_portfolio   Add a shuffle portfolio
add_top_portfolio       Add a top portfolio
adjacency_matrix        Adjacency matrix
as_km2                  Standardize unit to km^2
as_per_km2              Standardize unit to density per km^2
binary_stack            Binary stack
boundary_matrix         Boundary matrix
branch_matrix           Branch matrix
calibrate_cohon_penalty
                        Calibrate penalties with Cohon's method
category_layer          Category layer
category_vector         Category vector
compile                 Compile a problem
connectivity_matrix     Connectivity matrix
constraints             Conservation problem constraints
decisions               Add decision types
eval_asym_connectivity_summary
                        Evaluate asymmetric connectivity of solution
eval_boundary_summary   Evaluate boundary length of solution
eval_connectivity_summary
                        Evaluate connectivity of solution
eval_cost_summary       Evaluate cost of solution
eval_feature_representation_summary
                        Evaluate feature representation by solution
eval_ferrier_importance
                        Evaluate solution importance using Ferrier
                        scores
eval_n_summary          Evaluate number of planning units selected by
                        solution
eval_rank_importance    Evaluate solution importance using incremental
                        ranks
eval_rare_richness_importance
                        Evaluate solution importance using rarity
                        weighted richness scores
eval_replacement_importance
                        Evaluate solution importance using replacement
                        cost scores
eval_target_coverage_summary
                        Evaluate target coverage by solution
fast_extract            Fast extract
feature_abundances      Feature abundances
feature_names           Feature names
importance              Evaluate solution importance
intersecting_units      Find intersecting units
knit_print              Print an object for knitr package.
linear_interpolation    Linear interpolation
loglinear_interpolation
                        Log-linear interpolation
marxan_boundary_data_to_matrix
                        Convert _Marxan_ boundary data to matrix format
marxan_connectivity_data_to_matrix
                        Convert _Marxan_ connectivity data to matrix
                        format
marxan_problem          _Marxan_ conservation problem
new_waiver              Waiver
number_of_features      Number of features
number_of_planning_units
                        Number of planning units
number_of_total_units   Number of total units
number_of_zones         Number of zones
objectives              Add an objective
optimization_problem    Optimization problem
penalties               Add a penalty
portfolios              Add portfolios
presolve_check          Presolve check
prioritizr              prioritizr: Systematic Conservation
                        Prioritization in R
prioritizr-deprecated   Deprecation notice
problem                 Conservation planning problem
proximity_matrix        Proximity matrix
rescale_matrix          Rescale a matrix
rij_matrix              Feature by planning unit matrix
run_calculations        Run calculations
show                    Show
sim_data                Get simulated conservation planning data
simulate_cost           Simulate cost data
simulate_data           Simulate data
simulate_species        Simulate species habitat suitability data
solve                   Solve
solvers                 Add solvers
spec_absolute_targets   Specify absolute targets
spec_area_targets       Specify targets based on area units
spec_duran_targets      Specify targets following Durán _et al._ (2020)
spec_interp_absolute_targets
                        Specify targets based on interpolating absolute
                        thresholds
spec_interp_area_targets
                        Specify targets based on interpolating
                        area-based thresholds
spec_jung_targets       Specify targets following Jung _et al._ (2021)
spec_max_targets        Specify targets based on maxima
spec_min_targets        Specify targets based on minima
spec_polak_targets      Specify targets following Polak _et al._ (2015)
spec_pop_size_targets   Specify targets based on population size
spec_relative_targets   Specify relative targets
spec_rl_ecosystem_targets
                        Specify targets based on the IUCN Red List of
                        Ecosystems
spec_rl_species_targets
                        Specify targets based on the IUCN Red List of
                        Threatened Species
spec_rodrigues_targets
                        Specify targets following Rodrigues _et al._
                        (2004)
spec_rule_targets       Specify targets following a set of rules
spec_ward_targets       Specify targets following Ward _et al._ (2025)
spec_watson_targets     Specify targets following Watson _et al._
                        (2010)
spec_wilson_targets     Specify targets following Wilson _et al._
                        (2010)
summaries               Evaluate solutions using summary statistics
targets                 Add representation targets
tibble-methods          Manipulate tibbles
write_problem           Write problem
zone_names              Zone names
zones                   Management zones
