R: Simulate and Test Marker Dosage for Dominant Markers in Autopolyploids

# Simulate and Test Marker Dosage for Dominant Markers in Autopolyploids

## Documentation for package ‘polySegratio’ version 0.2-6

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

polySegratio-package | Segregation Ratios for Autoployploids
addMisclass | Misclassifies marker data in objects of class autoMarker or autoCross
addMissing | Adds missing data to objects of class autoMarker or autoCross
autoFill | Automatically fill out blanks of a vector with the preceding label
divide.autoMarkers | Divide markers by parental type
divideAutoMarkers | S3 class divideAutoMarkers
expected.segRatio | Compute theoretical segregation proportions for regular autopolyploids
makeLabel | Generate labels from two columns where blanks in first column are replaced by preceding non-blank label
plot.segRatio | Plot segregation ratios for either observed or simulated marker data
plot.simAutoCross | Plot segregation ratios for either observed or simulated marker data
plot.simAutoMarkers | Plot segregation ratios for either observed or simulated marker data
polySegratio | Segregation Ratios for Autoployploids
print.divideAutoMarkers | Print objects of class simAutoMarkers
print.segRatio | Print segregation ratios
print.simAutoCross | Print objects of class simAutoMarkers
print.simAutoMarkers | Print objects of class simAutoMarkers
print.testSegRatio | Print objects of class testSegRatio
segRatio | S3 class segRatio
segregationRatios | Compute observed segregation proportions for dominant markers in autopolyploids
sim.autoCross | Simulate dominant markers for an autopolyploid cross for all parental types
sim.autoMarkers | Simulates dominant markers from an autopolyploid cross
simAutoCross | S3 class simAutoCross
simAutoMarkers | S3 class simAutoMarkers
test.segRatio | Classic tests for assessing marker dosage in autopolyploids
testSegRatio | S3 class testSegRatio