# Generated by roxygen2: do not edit by hand

export(ancestry_prediction)
export(checkFiltering)
export(checkLoadingMat)
export(checkPlink)
export(checkPlink2)
export(checkRF_path)
export(check_het_and_miss)
export(check_hwe)
export(check_maf)
export(check_relatedness)
export(check_sex)
export(check_snp_missingness)
export(cleanData)
export(convert_from_vcf)
export(convert_to_plink2)
export(evaluate_ancestry_prediction)
export(evaluate_check_het_and_miss)
export(evaluate_check_relatedness)
export(evaluate_check_sex)
export(overviewPerIndividualQC)
export(overviewPerMarkerQC)
export(perIndividualQC)
export(perMarkerQC)
export(pruning_ld)
export(relatednessFilter)
export(rename_variant_identifiers)
export(run_ancestry_format)
export(run_ancestry_prediction)
export(run_check_heterozygosity)
export(run_check_missingness)
export(run_check_relatedness)
export(run_check_sex)
export(testNumerics)
import(ggplot2)
importFrom(UpSetR,upset)
importFrom(cowplot,plot_grid)
importFrom(dplyr,filter)
importFrom(dplyr,select)
importFrom(dplyr,select_)
importFrom(methods,as)
importFrom(methods,getPackageName)
importFrom(methods,is)
importFrom(optparse,OptionParser)
importFrom(optparse,make_option)
importFrom(optparse,parse_args)
importFrom(randomForest,randomForest)
importFrom(stats,median)
importFrom(stats,predict)
importFrom(stats,sd)
importFrom(tidyr,pivot_longer)
importFrom(utils,combn)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,write.table)
