R: Tools and Plots for Multi-Well Plates

# Tools and Plots for Multi-Well Plates

## Documentation for package ‘platetools’ version 0.1.7

- DESCRIPTION file

## Help Pages

bhit_map | Platemap to identify 'hits' following a B-score normalisation
b_grid | Plots multiple b-scored normalised platemaps
b_map | Plots a heatmap of b-score normalised values in a plate layout
b_score | 2 way median polish
check_plate_input | checks plate input for dodgy well plate combinations
dist_map | Plots distributions per well in a plate layout
fill_plate | Fill in missing wells
hit_grid | Plots multiple platemaps with and identifies hits
hit_map | Platemap to identify 'hits' in a screen
is_1536 | internal 1536 plate function for plate_map
is_old_ggplot | check ggplot2 version
legend_title | change legend title
list_to_dataframe | Converts list to a dataframe in a sensible way
med_smooth | 2-way median smooth
missing_wells | Returns wells that are missing from a complete plate
num_to_well | Converts numbers to well labels
pchit_grid | Plots multiple heatmaps identifying hits from the first principal component
pchit_map | Plots a heatmap identifying hits from the first principal component
pc_grid | Plots multiple platemaps as a heatmap of the first principal component.
pc_map | Principal component heatmap in a plate layout
plate_effect | Two way-median smooth on a plate map
plate_map | creates dataframe of row,column,data from wellID and data
plate_map_grid | creates dataframe of row, column, plate_id from data regarding wellIDs
plate_map_grid_scale | creates dataframe of row, column, plate_id from data regarding wellIDs
plate_map_multiple | row, column for multiple features
plate_map_scale | creates dataframe of row, column, and scaled data from well IDs
plate_matrix | plate layout matrix from well IDs
plt12 | ggplot plate object
plt1536 | ggplot plate object
plt24 | ggplot plate object
plt384 | ggplot plate object
plt48 | ggplot plate object
plt6 | ggplot plate object
plt96 | ggplot plate object
raw_grid | Plots multiple platemaps with heatmap of raw values
raw_map | Plots a platemap with heatmap of raw values
readmap_data | example data in a plate map form
read_map | Annotates dataframe with metadata in a platemap matrix
rotate_plate | rotates matrix by 180 degrees
set_block | Set values in rectangular areas of a plate
well_to_num | Converts well labels to numbers
z_grid | Plots multiple platemaps with heatmap of scaled values
z_map | Plots a platemap with heatmap of scaled values