R: Fit Probabilistic Index Models

# Fit Probabilistic Index Models

## Documentation for package ‘pim’ version 2.0.4

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

A C D E F G H I K L M N P R S T U V misc

pim-package | Probabilistic Index Models

## -- A --

add.poset | Add a poset to a pim.environment object
add.poset-method | Add a poset to a pim.environment object
as.data.frame | Convert a pim.environment to a data frame
as.data.frame-method | Convert a pim.environment to a data frame
as.matrix | Convert a pim.summary object to a matrix
as.matrix-method | Convert a pim.summary object to a matrix
as.matrix.pim.summary | Convert a pim.summary object to a matrix

## -- C --

classes | Extract information from pim.environment and pim.poset objects
classes-method | Extract information from pim.environment and pim.poset objects
coef | Extract the coefficients from a pim or pim.summary object
coef-method | Extract the coefficients from a pim or pim.summary object
compare | Extract information from pim.environment and pim.poset objects
compare-method | Extract information from pim.environment and pim.poset objects
confint | Calculate Wald confidence intervals around the coefficients of a PIM
confint-method | Calculate Wald confidence intervals around the coefficients of a PIM
confint.pim | Calculate Wald confidence intervals around the coefficients of a PIM
confint.pim.summary | Calculate Wald confidence intervals around the coefficients of a PIM
create.poset | Create a poset
CreateScoreFun | Create a score function for use in a pim.

## -- D --

DysData | This is the Dysphagia data

## -- E --

EngelData | This is the engel data
estimator.BB | Estimator functions for probabilistic index models
estimator.glm | Estimator functions for probabilistic index models
estimator.nleqslv | Estimator functions for probabilistic index models
estimators | Estimator functions for probabilistic index models
Extract.pim.summary | Extract method for pim.summary objects

## -- F --

FEVData | This is the Childhood respiratory disease data
fitted | Getters for slots of a pim object
fitted-method | Getters for slots of a pim object
formula | Extract the formula from a pim or pim.formula object
formula-method | Extract the formula from a pim or pim.formula object

## -- G --

getters-pim | Getters for slots of a pim object

## -- H --

has.intercept | Check whether formula has an explicit intercept
has.intercept-method | Check whether formula has an explicit intercept
has.specials | Extract information from a pim.formula object
has.specials-method | Extract information from a pim.formula object

## -- I --

is.complete | Check whether a pim environment is complete

## -- K --

keep.data | Getters for slots of a pim object

## -- L --

L | Specify the left hand and right hand side of an expression used in pims
lhs | Extract information from a pim.formula object
lhs, | Extract information from a pim.formula object
lhs-method | Extract information from a pim.formula object
link | Extract information from pim.environment and pim.poset objects
link-method | Extract information from pim.environment and pim.poset objects

## -- M --

MHData | This is the Mental health data
model | Extract information from pim.environment and pim.poset objects
model-method | Extract information from pim.environment and pim.poset objects
model.matrix | Create a model matrix for a probabilistic index model
model.matrix-method | Create a model matrix for a probabilistic index model
model.matrix.pim | Create a model matrix for a probabilistic index model
model.matrix.pim.formula | Create a model matrix for a probabilistic index model

## -- N --

names | Extract information from pim.environment and pim.poset objects
names-method | Extract information from pim.environment and pim.poset objects
new.pim | Create an object of class pim
new.pim.env | Constructor for a pim.environment
new.pim.env-method | Constructor for a pim.environment
new.pim.formula | Constructor for pim.formula
new.pim.formula-method | Constructor for pim.formula
new.pim.poset | Create a pim.poset environment
new.pim.poset-method | Create a pim.poset environment
nobs-method | Extract the number of observations

## -- P --

P | Probability function
penv | Extract a pim environment from a model or formula
penv-method | Extract a pim environment from a model or formula
pim | Fitting a Probabilistic Index Model
pim-class | Class pim
pim-getters | Getters for slots of a pim object
pim.environment | The pim.environment class
pim.environment-class | The pim.environment class
pim.fit | Fitter function for a probabilistic index model
pim.formula | Class pim.formula
pim.formula-class | Class pim.formula
pim.poset | The pim.poset class
pim.poset-class | The pim.poset class
pim.summary | Class pim.summary
pim.summary-class | Class pim.summary
pimdata | The data contained in the pim package
PO | Probability function
poset | Extract the poset as a matrix or list
poset-method | Extract the poset as a matrix or list
PP | Specify the left hand and right hand side of an expression used in pims
print | Print methods for the different object types
print-method | Print methods for the different object types

## -- R --

R | Specify the left hand and right hand side of an expression used in pims
response | Extract response from a pim.formula or a pim object
response-method | Extract response from a pim.formula or a pim object

## -- S --

sandwich.estimator | Pseudo-observation variance sandwich estimator
sandwich.vcov | vcov estimators for pim
score.estimator | Pseudo-observation variance sandwich estimator
score.vcov | vcov estimators for pim
SUData | This is the Surgical unit data
summary | The summary function for the pim class
summary-method | The summary function for the pim class
summary.pim | The summary function for the pim class

## -- T --

terms | Extract information from a pim.formula object
terms, | Extract information from a pim.formula object
terms-method | Extract information from a pim.formula object

## -- U --

U.sandwich | Internal functions for vcov estimation
U.score | Internal functions for vcov estimation

## -- V --

vcov | Methods for vcov
vcov-method | Methods for vcov
vcov.estimators | vcov estimators for pim
vcov.internal | Internal functions for vcov estimation

## -- misc --

.make.posfun | Create a poset function
[-method | Extract method for pim.summary objects