# Generated by roxygen2: do not edit by hand

S3method(arc_labels,default)
S3method(plot,phyloregion)
S3method(plot,sparse)
export(EDGE)
export(Matrix)
export(PD)
export(PD_ses)
export(RPD)
export(arc_labels)
export(backg)
export(beta_core)
export(beta_diss)
export(choropleth)
export(coldspots)
export(collapse_range)
export(counts)
export(dense2long)
export(dense2sparse)
export(dirpath)
export(evol_distinct)
export(fishnet)
export(fitgom)
export(functional_beta)
export(get_clades)
export(hexcols)
export(hotspots)
export(indicators)
export(infomap)
export(long2dense)
export(long2sparse)
export(map_trait)
export(match_phylo_comm)
export(mean_dist)
export(nodepie)
export(optimal_phyloregion)
export(phylo_endemism)
export(phylobeta)
export(phylobeta_core)
export(phylobeta_ses)
export(phylobuilder)
export(phyloregion)
export(plot.phyloregion)
export(plot.sparse)
export(plot_NMDS)
export(plot_spatial_membership)
export(points2comm)
export(polys2comm)
export(random_species)
export(randpoints)
export(rast2comm)
export(rast_hotspot)
export(rast_quantile)
export(read.community)
export(sdm)
export(select_linkage)
export(selectbylocation)
export(sparse2dense)
export(sparse2long)
export(sparseMatrix)
export(text_NMDS)
export(timeslice)
export(tree_sampler)
export(unifrac)
export(weighted_endemism)
importFrom(Matrix,Diagonal)
importFrom(Matrix,Matrix)
importFrom(Matrix,as.matrix)
importFrom(Matrix,colSums)
importFrom(Matrix,crossprod)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseMatrix)
importFrom(Matrix,t)
importFrom(Matrix,tcrossprod)
importFrom(Matrix,tril)
importFrom(ape,.PlotPhyloEnv)
importFrom(ape,Nnode)
importFrom(ape,Ntip)
importFrom(ape,branching.times)
importFrom(ape,di2multi)
importFrom(ape,drop.tip)
importFrom(ape,getMRCA)
importFrom(ape,is.rooted)
importFrom(ape,is.ultrametric)
importFrom(ape,keep.tip)
importFrom(ape,label2table)
importFrom(ape,node.depth.edgelength)
importFrom(ape,read.tree)
importFrom(ape,reorder.phylo)
importFrom(ape,stripLabel)
importFrom(clustMixType,kproto)
importFrom(colorspace,LAB)
importFrom(colorspace,coords)
importFrom(colorspace,hex)
importFrom(colorspace,hex2RGB)
importFrom(colorspace,mixcolor)
importFrom(colorspace,polarLUV)
importFrom(grDevices,as.graphicsAnnot)
importFrom(grDevices,chull)
importFrom(grDevices,col2rgb)
importFrom(grDevices,dev.cur)
importFrom(grDevices,dev.size)
importFrom(grDevices,hcl.colors)
importFrom(grDevices,rgb)
importFrom(grDevices,xy.coords)
importFrom(graphics,abline)
importFrom(graphics,clip)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,plot.default)
importFrom(graphics,points)
importFrom(graphics,polygon)
importFrom(graphics,rect)
importFrom(graphics,segments)
importFrom(graphics,strheight)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(graphics,xinch)
importFrom(graphics,yinch)
importFrom(igraph,cluster_infomap)
importFrom(igraph,communities)
importFrom(igraph,graph_from_incidence_matrix)
importFrom(igraph,membership)
importFrom(maptpx,topics)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,slot)
importFrom(parallel,mclapply)
importFrom(phangorn,Ancestors)
importFrom(phangorn,Descendants)
importFrom(phangorn,add.tips)
importFrom(phangorn,getRoot)
importFrom(predicts,MaxEnt)
importFrom(predicts,folds)
importFrom(predicts,pa_evaluate)
importFrom(smoothr,smooth)
importFrom(stats,aggregate)
importFrom(stats,as.dist)
importFrom(stats,complete.cases)
importFrom(stats,cophenetic)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,formula)
importFrom(stats,gaussian)
importFrom(stats,glm)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,reformulate)
importFrom(stats,reorder)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(terra,"crs<-")
importFrom(terra,"values<-")
importFrom(terra,"window<-")
importFrom(terra,aggregate)
importFrom(terra,as.data.frame)
importFrom(terra,as.polygons)
importFrom(terra,buffer)
importFrom(terra,centroids)
importFrom(terra,classify)
importFrom(terra,convHull)
importFrom(terra,crop)
importFrom(terra,crs)
importFrom(terra,deepcopy)
importFrom(terra,distance)
importFrom(terra,ext)
importFrom(terra,extract)
importFrom(terra,geom)
importFrom(terra,geomtype)
importFrom(terra,global)
importFrom(terra,intersect)
importFrom(terra,is.lonlat)
importFrom(terra,levels)
importFrom(terra,mask)
importFrom(terra,median)
importFrom(terra,merge)
importFrom(terra,ncell)
importFrom(terra,nlyr)
importFrom(terra,predict)
importFrom(terra,project)
importFrom(terra,rast)
importFrom(terra,rasterize)
importFrom(terra,relate)
importFrom(terra,resample)
importFrom(terra,setValues)
importFrom(terra,spatSample)
importFrom(terra,values)
importFrom(terra,vect)
importFrom(terra,xyFromCell)
importFrom(utils,modifyList)
importFrom(utils,read.csv)
importFrom(utils,setTxtProgressBar)
importFrom(utils,tail)
importFrom(utils,txtProgressBar)
importMethodsFrom(terra,plot)
importMethodsFrom(terra,text)
