Package: phyloatlas
Type: Package
Title: Access to the 'Phylo-Species Atlas' of Empirical Phylogenies
Version: 0.1.0
Authors@R: 
    person(given = "Francisco",
           family = "Richter",
           email = "richtf@usi.ch",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-0924-4613"))
Description: Provides convenience functions to fetch standardized
    phylogenetic trees and per-tree provenance metadata from the
    'Phylo-Species Atlas'
    <https://github.com/franciscorichter/phylo-species-atlas> directly
    from R. The atlas is a curated collection of empirical
    species-level trees covering Bacteria, Archaea, and Eukaryota,
    organized into 62 partitions of life with tip labels normalized
    against a shared dictionary of standardized species identifiers.
    Functions load any of the standardized trees with species labels
    resolved from the dictionary, list available trees, and inspect
    per-tree provenance.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/franciscorichter/phylo-species-atlas,
        https://franciscorichter.github.io/phylo-species-atlas/
BugReports: https://github.com/franciscorichter/phylo-species-atlas/issues
Depends: R (>= 4.0)
Imports: ape, utils
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), withr
Config/testthat/edition: 3
VignetteBuilder: knitr
RoxygenNote: 7.3.3
NeedsCompilation: no
Packaged: 2026-05-31 14:49:51 UTC; pancho
Author: Francisco Richter [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0924-4613>)
Maintainer: Francisco Richter <richtf@usi.ch>
Repository: CRAN
Date/Publication: 2026-06-04 12:00:02 UTC
Built: R 4.6.0; ; 2026-06-04 14:25:22 UTC; unix
